Job Description P06721 Confidence 99.94% Date Wed Jan 25 15:20:11 GMT 2012 Rank 119 Aligned Residues 347 % Identity 13% Template c2o1bA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class i; PDBTitle: structure of aminotransferase from staphylococcus aureus Resolution 1.95 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																												.														.	.	.	.	.	.	.	.
Query SS confidence																																																												.														.	.	.	.	.	.	.	.
Query Sequence		L	D	T	Q	L	V	N	A	G	R	S	K	K	Y	T	L	G	A	V	N	S	V	I	Q	R	A	S	S	L	V	F	D	S	V	E	A	K	K	H	A	T	R	N	R	A	N	G	E	L	F	Y	G	R	R	G	T	L	T	.	H	F	S	L	Q	Q	A	M	C	E	L	E	G	.	.	.	.	.	.	.	.
Query Conservation																																																												.														.	.	.	.	.	.	.	.
Alig confidence																																																	.											.														.	.	.	.	.	.	.	.
Template Conservation																																																	.
Template Sequence		I	S	N	K	L	A	N	I	P	D	S	Y	F	G	E	H	G	P	L	P	L	I	N	X	A	V	G	I	P	D	G	P	T	P	Q	G	I	I	D	H	F	Q	K	A	L	T	I	.	P	E	N	Q	K	Y	G	A	F	H	G	K	E	A	F	K	Q	A	I	V	D	F	Y	Q	R	Q	Y	N	V	T	L	D
Template Known Secondary structure								T	S				T	T					S	S									S		S	S														T	T		.					S				T	T
Template Predicted Secondary structure																																																	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
			77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.							.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																																																												.	.	.	.	.	.
Query SS confidence		.																																																												.	.	.	.	.	.
Query Sequence		.	G	A	G	C	V	L	F	P	C	G	A	A	A	V	A	N	S	I	L	A	F	I	E	Q	G	D	H	V	L	M	T	N	T	A	Y	E	P	S	Q	D	F	C	S	K	I	L	S	K	L	G	V	T	T	S	W	F	D	P	L	.	.	.	.	.	.	I	G	A	D	I	V	K	H	L	Q	P	N	T	K
Query Conservation		.																																																												.	.	.	.	.	.
Alig confidence		.																																						.	.	.	.																			.	.	.	.	.	.
Template Conservation																																								.	.	.	.
Template Sequence		K	E	D	E	V	C	I	L	Y	G	T	K	N	G	L	V	A	V	P	T	C	V	I	N	P	G	D	Y	V	L	L	P	D	P	G	Y	T	D	.	.	.	.	Y	L	A	G	V	L	L	A	D	G	K	P	V	P	L	N	L	E	P	P	H	Y	L	P	D	W	S	K	V	D	S	Q	I	I	D	K	T	K
Template Known Secondary structure		T	T	T	S					S	S															T	T								S			S	S	.	.	.	.								T	T										T	T	T					G	G	G	S
Template Predicted Secondary structure																																								.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.					.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.									.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																											.																					.	.	.	.	.	.	.	.
Query SS confidence																											.																					.	.	.	.	.	.	.	.
Query Sequence		I	V	F	L	E	S	P	G	S	I	T	M	E	V	H	D	V	P	A	I	V	A	A	V	R	.	S	V	V	P	D	A	I	I	M	I	D	N	T	W	A	A	G	V	L	F	.	.	.	.	.	.	.	.	K	A	L	D	F	G	I	D	V	S	I	Q	A	A	T	K	Y	L	V	G	H	S	D	A	M	I
Query Conservation																											.																					.	.	.	.	.	.	.	.
Alig confidence																											.																					.	.	.	.	.	.	.	.																			.
Template Conservation																																																																										.
Template Sequence		L	I	Y	L	T	Y	P	N	N	P	T	G	S	T	A	T	K	E	V	F	D	E	A	I	A	K	F	K	G	T	D	T	K	I	V	H	D	F	A	Y	G	A	F	G	F	D	A	K	N	P	S	I	L	A	S	E	N	G	K	D	V	A	I	E	I	Y	S	L	S	K	G	Y	.	N	X	S	G	F	R	V
Template Known Secondary structure							S	S		T	T	T																	T	T	S	S								T	T	T	T		B	S	S	S					G	G	G	S	T	T											S	T	T	T	T	.	T		G	G	G
Template Predicted Secondary structure																																																																										.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	A	V	C	N	A	R	C	W	E	Q	L	R	E	N	A	Y	L	M	G	Q	M	V	D	A	D	T	A	Y	I	T	S	R	G	L	R	T	L	G	V	R	L	R	Q	H	H	E	S	S	L	K	V	A	E	W	L	A	E	H	P	Q	V	A	R	V	N	H	P	A	L	P	G	S	K	G	H	E	F	W
Query Conservation
Alig confidence																																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		G	F	A	V	G	N	K	D	X	I	Q	A	L	K	K	Y	Q	T	H	T	N	A	G	X	F	G	A	L	Q	D	A	A	I	Y	A	L	N	H	Y	D	D	F	L	E	E	Q	S	N	V	F	K	T	R	R	D	R	F	E	A	X	L	A	K	A	D	L	P	F	V	H	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																																																																	T	T						.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence		K	R	D	F	T	G	S	S	G	L	F	S	F	V	L	K	K	K	L	N	N	E	E	L	A	N	Y	L	D	N	F	S	L	F	S	M	A	Y	S	W	G	G	Y	E	S	L	I	L	A	N	Q	P	E	H	I	A	A	I	R	P	Q	G	E	I	D	F	S	G	T	L	I	R	L	H	I	G	L	.	.	E
Query Conservation																																																																															.	.
Alig confidence		.	.	.	.																									.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation		.	.	.	.																									.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	A	K	G	G	I	Y	V	W	L	E	T	P	P	G	Y	D	S	E	Q	F	E	Q	F	L	.	.	V	Q	E	K	S	I	L	V	A	P	G	K	P	F	G	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	R	Y	V	R	I	S	L	A	L	D	D	Q
Template Known Secondary structure		.	.	.	.			B	S	S								T	T											.	.											S	G	G	G		G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	T								S		T	T
Template Predicted Secondary structure		.	.	.	.																									.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.			.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.																				.	.	.	.	.	.	360	.	.	.	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	D	D	L	I	A	D	L	D	A	G	F	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	D	E	A	A	I	R	L	T	E	L	A	Y	L
Template Known Secondary structure												G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions