Job Description P06721 Confidence 99.94% Date Wed Jan 25 15:20:11 GMT 2012 Rank 135 Aligned Residues 316 % Identity 16% Template c2douA_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase; PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8 Resolution 2.30 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.										.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.
Query Sequence		F	D	S	V	E	A	K	K	H	A	T	R	N	R	A	N	G	E	L	F	Y	G	R	R	G	T	L	T	H	F	S	L	Q	Q	A	M	C	E	L	E	G	.	.	.	.	.	.	.	.	.	G	A	G	C	V	L	F	P	C	G	A	A	A	V	A	N	S	I	L	A	F	I	E	Q	G	D	H	V	L	M
Query Conservation																																											.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	P	P	E	A	P	L	K	A	L	A	E	A	L	N	D	P	T	T	Y	G	Y	C	L	K	S	C	T	L	P	F	L	E	E	A	A	R	W	Y	E	G	R	Y	G	V	G	L	D	P	R	R	E	A	L	A	L	I	G	S	Q	E	G	L	A	H	L	L	L	A	L	T	E	P	E	D	L	L	L	L
Template Known Secondary structure																T	T		G	G	G	S	S																							S					T	T	T	S					S	S															T	T
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.						.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180
Predicted Secondary structure																															.	.	.	.	.																																								.
Query SS confidence																															.	.	.	.	.																																								.
Query Sequence		T	N	T	A	Y	E	P	S	Q	D	F	C	S	K	I	L	S	K	L	G	V	T	T	S	W	F	D	P	L	.	.	.	.	.	I	G	A	D	I	V	K	H	L	Q	P	N	T	K	I	V	F	L	E	S	P	G	S	I	T	M	E	V	H	D	V	P	A	I	V	A	A	V	R	.	S	V	V	P	D	A
Query Conservation																															.	.	.	.	.																																								.
Alig confidence									.	.	.	.																			.	.	.	.	.																																								.
Template Conservation									.	.	.	.
Template Sequence		P	E	V	A	Y	P	S	.	.	.	.	Y	F	G	A	A	R	V	A	S	L	R	T	F	L	I	P	L	R	E	D	G	L	A	D	L	K	A	V	P	E	G	V	W	R	E	A	K	V	L	L	L	N	Y	P	N	N	P	T	G	A	V	A	D	W	G	Y	F	E	E	A	L	G	L	A	R	K	H	G	L
Template Known Secondary structure			S	S					.	.	.	.								T	T								B		T	T	S	S	B		G	G	G	S															S	S		T	T	T																			T	T
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.					.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.									.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.
Query Sequence		I	I	M	I	D	N	T	W	A	A	G	V	L	F	K	A	L	D	F	G	I	D	.	.	.	.	.	.	.	.	V	S	I	Q	A	A	T	K	Y	L	V	G	H	S	D	A	M	I	G	T	A	V	C	N	A	R	C	W	E	Q	L	R	E	N	A	Y	L	M	G	Q	M	V	D	A	D	T	A	Y	I	T
Query Conservation																								.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.											.
Template Conservation																																										.
Template Sequence		W	L	I	H	D	N	P	Y	V	D	Q	V	Y	E	G	E	A	P	S	P	L	A	L	P	G	A	K	E	R	V	V	E	L	F	S	L	S	K	S	Y	.	N	L	A	G	F	R	L	G	F	A	L	G	S	E	E	A	L	A	R	L	E	R	V	K	G	V	I	D	F	N	Q	Y	A	G	V	L	R	M	G
Template Known Secondary structure								T	T	G	G	G	B	S	S	S					G	G	G	S	T	T	G	G	G	T												.	T		G	G	G																										S
Template Predicted Secondary structure																																										.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	G	L	R	T	L	G	V	R	L	R	Q	H	H	E	S	S	L	K	V	A	E	W	L	A	E	H	P	Q	V	A	R	V	N	H	P	A	L	P	G	S	K	G	H	E	F	W	K	R	D	F	T	G	S	S	G	L	F	S	F	V	L	K	K	K	L	N	N	E	E	L	A	N	Y	L	D	N	F	S
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Sequence		V	E	A	L	K	T	P	K	E	V	V	R	G	Y	A	R	V	Y	R	E	R	A	L	G	M	A	E	A	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	L	S	L	L	P	P	R	A	T	M	Y	L	W	G	R	L	P	E	G	V	D	D	L	E	F	.	.	.	G	L	R	L	V
Template Known Secondary structure						T	S																								T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S							B	S	S								T	T							.	.	.
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.																.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.				.	330	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	S	M	A	Y	S	W	G	G	Y	E	S	L	I	L	A	N	Q	P	E	H	I	A	A	I	R	P	Q	G	E	I	D	F	S	G	T	L	I	R	L	H	I	G	L	E	D	V	D	D	L	I	A	D	L	D	A	G	F	A	R	I	V
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Sequence		E	R	G	V	A	L	A	P	G	R	G	F	G	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	G	F	V	R	I	A	L	V	.	.	R	P	L	E	E	L	L	E	A	A	K	R	I	R	E	A	L
Template Known Secondary structure			T	T						G	G	G	G		G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	T								.	.	S															T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.																				.	350	.	.	.	.	.	.	.	.			.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions