Return to main results Retrieve Phyre Job Id

Job DescriptionP06721
Confidence99.94%DateWed Jan 25 15:20:11 GMT 2012
Rank134Aligned Residues320
% Identity15%Templatec1d2fB_
PDB info PDB header:transferaseChain: B: PDB Molecule:maly protein; PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   36...40.........50. ........60.........70..... ....80.........90.........100......
Predicted Secondary structure 







.









........









Query SS confidence 















.























. . . . . . . .






























Query Sequence  FDSVEAKKHATRNRAN. GELFYGRRGTLTHFSLQQAMCELE. . . . . . . . GGAGCVLFPCGAAAVANSILAFIEQGDHVLM
Query Conservation                  .    
 
   

   

  

 
 ........
    
   

  
   

 


  

 

 
Alig confidence 















.










...









........






























Template Conservation        
  
           
      ... 

 


       
       
  
 
 
  
          

 

 
Template Sequence  FATAPCIIEALNQRLMHGVFGYSRWKND. . . EFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVI
Template Known Secondary structure  S


TT






S

...S




GGGS
S
TT
Template Predicted Secondary structure 














...











Template SS confidence 















































































   40.........50.........60....... ..70.........80.........90.........100.........110......
 
   107..110.........120.........130..... ....140.... .....150.........160.........170.... ..
Predicted Secondary structure 










........

.
















.
Query SS confidence 




























. . . . . . . .








.





























.

Query Sequence  TNTAYEPSQDFCSKILSKLGVTTSWFDPL. . . . . . . . IGADIVKHL. QPNTKIVFLESPGSITMEVHDVPAIVAAVR. SV
Query Conservation                     

     
  ........
   
    .   
  
      
  
    
  
   
 .  
Alig confidence 











....












........








.





























.

Template Conservation    
         ....   
     
                                 
         
    
   
 
Template Sequence  HTPAYDAFYKAI. . . . EGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCE
Template Known Secondary structure  S

T....TT

TT

TSTTSS
TTT




Template Predicted Secondary structure 





....

































Template SS confidence 















































































   117..120........ .130.........140.........150.........160.........170.........180.........190..
 
   177..180.........190........ .200.........210.........220.........230.........240.........
Predicted Secondary structure 
















.......
























Query SS confidence 





















. . . . . . .


















































Query Sequence  VPDAIIMIDNTWAAGVLFKALD. . . . . . . FGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTA
Query Conservation    
  



 
   
       ....... 
 
    
 

   
     

 
         
       
       
Alig confidence 





















.......













.



































Template Conservation       

 
                            
 

  .   


 
                            
Template Sequence  RHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSF. NIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSV
Template Known Secondary structure  TT

TTTT
B
SSS



GGGT

SS
S.T
GGG


STTS


S

Template Predicted Secondary structure 




















.















Template SS confidence 















































































   193......200.........210.........220.........230..... ....240.........250.........260.........270.
 
   250.........260.........270.........280.........290.........300.........310...... ...320.......
Predicted Secondary structure 


















..



Query SS confidence 


































































. .










Query Sequence  YITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLK. . KKLNNEELANY
Query Conservation        
  
  
       
  

           
    
   
   
            

 
 ..           
Alig confidence 













































.........











..










Template Conservation      
                                         .........
  
    
               
Template Sequence  LALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQI. . . . . . . . . PQSTYLAWLDLRPLNIDDNALQKAL
Template Known Secondary structure 

TTT



.........
SB
S
GGG


Template Predicted Secondary structure 












.........










Template SS confidence 















































































   272.......280.........290.........300.........310....... ..320.........330.........340..
 
   328.330.........340.........350.........360.........370....... ..380.........390....
Predicted Secondary structure 



























..

Query SS confidence 

















































. .
















Query Sequence  LDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGL. . EDVDDLIADLDAGFARI
Query Conservation     
    
  
 
   

                  

    



 

..
   


 

  

  
Alig confidence 


...













...................










..
















Template Conservation 
  ... 

 
 

  
   ...................    



       
   
 

   
  
Template Sequence  IEQ. . . EKVAIMPGYTYGEE. . . . . . . . . . . . . . . . . . . GRGFVRLNAGCPRSKLEKGVAGLINAIRAV
Template Known Secondary structure  T...T

GGGG
GG...................GTT

S
Template Predicted Secondary structure  ...





...................





Template SS confidence 




































































   343.. ....350......... 360.........370.........380.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions