Job Description P0A8D6 Confidence 100.00% Date Thu Jan 5 11:07:34 GMT 2012 Rank 19 Aligned Residues 156 % Identity 27% Template c3gpqA_ PDB info PDB header:viral protein/rna Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: crystal structure of macro domain of chikungunya virus in complex with2 rna Resolution 2.00 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	V	V	Q	G	D	I	T	K	L	A	V	D	V	I	V	N	A	A	N	P	S	L	M	G	G	G	G	V	D	G	A	I	H	R	A	A	G	P	A	L	L	D	A	C	L	K	V	R	Q	Q	Q	G	D	C	P	T	G	H	A	V	I	T	L	A	G	D	L	P	A	K	A	V	V	H	T	V	G	P
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.																		.	.	.
Template Sequence		Y	R	V	K	R	M	D	I	A	K	N	D	E	E	C	V	V	N	A	A	N	P	R	G	L	P	G	D	G	V	C	K	A	V	Y	K	K	W	P	E	S	F	K	N	.	.	.	.	.	.	.	.	.	S	A	T	P	V	G	T	A	K	T	V	M	C	G	T	Y	P	.	.	.	V	I	H	A	V	G	P
Template Known Secondary structure							S		G	G	G			S	S								T	T					S											G	G	G	G	T	T	.	.	.	.	.	.	.	.	.					T	T								T	T			.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.																		.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.										.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.
		85	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		V	W	R	G	G	E	Q	.	N	E	D	Q	L	L	Q	D	A	Y	L	N	S	L	R	L	V	A	A	N	S	Y	T	S	V	A	F	P	A	I	S	T	G	V	Y	G	Y	P	R	A	A	A	A	E	I	A	V	K	T	V	S	E	F	I	T	R	H	A	L	P	E	Q	V	Y	F	V	C	Y	D	E	E	N
Query Conservation									.
Alig confidence									.																																																						.	.	.
Template Conservation																																																															.	.	.
Template Sequence		N	F	S	N	Y	S	E	S	E	G	D	R	E	L	A	A	A	Y	R	E	V	A	K	E	V	T	R	L	G	V	N	S	V	A	I	P	L	L	S	T	G	V	Y	S	G	G	K	D	R	L	T	Q	S	L	N	H	L	F	T	A	M	.	.	.	D	S	T	D	A	D	V	V	I	Y	C	R	D	K	E	W
Template Known Secondary structure			T	T	T	S																								T		S							T	T		G	G	G	S	T	T	S															.	.	.	T	T	S		S							S
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	L	Y	E	R	L	L	T	Q	Q	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	K	I	S	E	A	I	Q	M	R	T
Template Known Secondary structure											T	T
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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