Job Description P39265 Confidence 100.00% Date Thu Jan 5 11:58:38 GMT 2012 Rank 52 Aligned Residues 258 % Identity 18% Template c3clkB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcription regulator; PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum Resolution 2.08 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	K	T	L	S	N	P	F	W	V	D	M	K	K	G	I	E	D	E	A	K	T	L	G	V	S	V	D	I	F	A	S	P	S	E	G	D	F	Q	S	Q	L	Q	L	F	E	D	L	S	N	K	N	Y	K	G	I	A	F	A	P	L	S	S	V	N	L	V	M	P	V	A	R	A	W	K	K	G	I	Y
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.																					.	.
Template Conservation																																				.	.	.	.	.	.	.																					.	.
Template Sequence		V	I	A	A	V	V	S	N	F	A	Q	Q	I	L	D	G	I	Q	E	E	A	H	K	N	G	Y	N	L	I	I	V	Y	E	E	.	.	.	.	.	.	.	Q	K	H	A	L	L	T	A	I	E	R	P	V	X	G	I	L	L	L	S	.	.	I	A	L	T	D	D	N	L	Q	L	L	Q	S	S	D	V	P
Template Known Secondary structure																							T	T	T	T										.	.	.	.	.	.	.											S			S						S	.	.														T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.																					.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.								.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	N	L	D	E	K	I	D	M	D	N	L	K	K	A	G	G	N	V	E	A	F	V	T	T	D	N	V	A	V	G	A	K	G	A	S	F	I	I	D	K	L	G	A	E	G	G	E	V	A	I	I	E	G	K	A	G	N	A	S	G	E	A	R	R	N	G	A	T	E	A	F	K	K	A	S	Q	I	K
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.																				.	.	.
Template Sequence		Y	C	F	L	S	X	G	F	D	D	D	R	P	.	.	.	.	.	.	.	.	.	F	I	S	S	D	D	E	D	I	G	Y	Q	A	T	N	L	L	I	N	.	.	.	E	G	H	R	Q	I	G	I	A	G	I	D	Q	Y	P	Y	T	G	R	K	R	L	A	G	Y	K	K	A	L	K	E	A	N	I	A	I
Template Known Secondary structure						S				S	S	S			.	.	.	.	.	.	.	.	.																			T	.	.	.	T	T			S					S				S	S																	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.																				.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.										.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		L	V	A	S	Q	P	A	D	W	D	R	I	K	A	L	D	V	A	T	N	V	L	Q	R	N	P	N	I	K	A	I	Y	C	A	N	D	T	M	A	M	G	V	A	Q	A	V	A	N	A	G	.	.	K	T	G	K	V	L	V	V	G	T	D	G	I	P	E	A	R	K	M	V	E	A	G	Q	M	T	A	T
Query Conservation																																																				.	.
Alig confidence																																																				.	.																							.	.	.
Template Conservation																																																																												.	.	.
Template Sequence		N	Q	E	W	I	K	P	G	D	Y	S	Y	T	S	G	E	Q	A	X	K	A	F	G	K	N	T	D	L	T	G	I	I	A	A	S	D	X	T	A	I	G	I	L	N	Q	A	S	S	F	G	I	E	V	P	K	D	L	S	I	V	S	I	D	G	T	E	X	C	K	I	T	R	P	Q	.	.	.	L	T	S
Template Known Secondary structure			G	G	G						S	S													T	T				S					S	S														T	T			T	T	T	T										G	G	G	G	S	S	S	S		.	.	.
Template Predicted Secondary structure																																																																												.	.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.				.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		V	A	Q	N	P	A	D	I	G	A	T	G	L	K	L	M	V	D	A	E	K	S	G	.	K	V	I	P	L	D	K	A	P	E	F	K	L	V	D	S	I	L	V	T	Q
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		I	S	Q	D	F	F	Q	X	G	V	T	G	V	Q	Q	I	H	Q	S	V	K	N	G	S	N	R	I	V	S	Q	Q	F	I	P	V	N	P	V	I	R	K	S	T	A	R
Template Known Secondary structure																							T	S																		S	S
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions