 |
Job Description | P0A6Y8 | Confidence | 97.69% | Date | Thu Jan 5 11:04:15 GMT 2012 |
Rank | 76 | Aligned Residues | 84 |
% Identity | 18% | Template | c3g25B_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:glycerol kinase; |
PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol.
|
Resolution | 1.90 Å |
|
 |
  |   |
302 | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | A | K | L | E | S | L | V | E | D | L | V | N | R | S | I | E | P | L | K | V | A | L | Q | D | A | G | L | S | V | S | D | I | D | D | V | I | L | V | G | G | Q | T | R | M | P | M | V | Q | K | K | V | A | E | F | F | G | K | E | P | R | K | D | V | N | P | D | E | A | V | A | I | G | A | A | V | Q | G | G | V |
Query Conservation |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|
|
|
|   |
|
|
|
|   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|
|
|
|   |
|
|
|   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   | . | . | . |   |   |   |
|   |   |   |
|
|   |
|   |
|   |   |   |   |
|
|   |
|
|
|
|
|   |   |
|   |   |   |   |   |   | . |
|   |   |
|   |
|
|
|   |   |
|   |   |
Template Sequence |   |
E | H | F | I | R | A | T | L | E | S | L | C | Y | Q | T | R | D | V | X | E | A | X | S | K | D | S | G | I | D | . |
. |
. |
V | Q | S | L | R | V | D | G | G | A | V | K | N | N | F | I | X | Q | F | Q | A | D | I | V | N | T | S | V | E | R | P | E | I | Q | . |
E | T | T | A | L | G | A | A | F | L | A | G | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . |
| S |
|  |  |  |  | S | G | G | G | G |
|  |  |  |  |  |  |  |  |  |  |  | T | S |
|  |  |  |  | S |
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
373 | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | |
|
|
. | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | |
. | . | . | . | 440 | . | . | . | . | . | . | . | . |
  |
  |   |
382 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
Query Sequence |   |
L | T | G | D | V | K | D | V |
Query Conservation |   |
  |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |   |
Template Sequence |   |
A | V | G | F | W | E | S | K |
Template Known Secondary structure |   |
 | T | T | S | S | S |
| T |
Template Predicted Secondary structure |   |
 |
|
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
  |   |
449 | 450 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|