Job Description P0A6Y8 Confidence 96.66% Date Thu Jan 5 11:04:15 GMT 2012 Rank 94 Aligned Residues 285 % Identity 18% Template c2ivoC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein Resolution 2.9 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	K	I	I	G	I	D	L	G	T	T	N	S	C	V	A	I	M	D	G	T	T	P	R	V	L	E	N	A	E	G	D	R	T	T	P	S	I	I	A	Y	T	Q	D	G	E	T	L	V	G	Q	P	A	K	R	Q	A	V	T	N	P	Q	N	T	L	F	A	I	K	R	L	I	G	R	R	F	Q	D	E
Query Conservation
Alig confidence				.																				.	.				.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.																				.	.				.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	L	.	A	L	G	I	E	G	T	A	H	T	L	G	I	G	I	V	S	E	D	.	.	K	V	L	.	.	.	.	.	.	.	.	.	.	A	N	V	F	D	T	L	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				.							S	S	S									S	S	.	.				.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.																				.	.				.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.											.	.	.	.	.	30	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.							.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.
Query Sequence		E	V	Q	R	D	V	S	I	M	P	F	K	I	I	A	A	D	N	G	D	A	W	V	E	V	K	G	Q	K	M	A	P	P	Q	I	S	A	E	V	L	K	K	M	K	K	T	A	E	D	Y	L	G	.	.	.	.	.	.	E	P	V	T	E	A	V	I	T	V	P	A	Y	F	N	D	A	Q	R	Q	A	T
Query Conservation																																																						.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	G	G	I	H	P	K	E	A	A	E	H	H	A	R	L	M	K	P	L	L	R	K	A	L	S	E	A	G	V	S	L	D	D	I	D	V	I	A	F	S	Q	G	P	G	L	G	P	A	L	R	V	V	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S		S																										T			T	T	T										S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																											34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		K	D	A	G	R	I	A	G	L	.	.	E	V	K	R	I	I	N	E	P	T	A	A	A	L	A	Y	G	L	D	K	G	T	G	N	R	T	I	A	V	Y	D	L	G	G	G	T	F	D	I	S	I	I	E	I	D	E	V	D	G	E	K	T	F	E	V	L	A	T	N	G	D	T	H	L	G	G	E	D	F
Query Conservation											.	.
Alig confidence											.	.																														.	.	.															.	.	.	.	.	.														.	.	.	.
Template Conservation																																										.	.	.															.	.	.	.	.	.														.	.	.	.
Template Sequence		T	A	A	R	A	L	A	V	K	Y	R	K	P	I	V	G	V	N	H	C	I	A	H	V	E	I	T	K	M	F	G	V	K	D	P	V	G	L	Y	V	.	.	.	S	G	G	N	T	Q	V	L	A	L	E	G	G	R	.	.	.	.	.	.	Y	R	V	F	G	E	T	L	D	I	G	I	G	.	.	.	.
Template Known Secondary structure											T	T															G	G	G	G	G	T			S							.	.	.		S	S									T	T		.	.	.	.	.	.							B	S	S	S				.	.	.	.
Template Predicted Secondary structure																																										.	.	.															.	.	.	.	.	.														.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.				.	130	.	.	.	.	.	.	.	.	.	140	.	.							.	.	.	.	.	.	.	150	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	S	R	L	I	N	Y	L	V	E	E	F	K	K	D	Q	G	I	D	L	R	N	D	P	L	A	M	Q	R	L	K	E	A	A	E	K	A	K	I	E	L	S	S	A	Q	Q	T	D	V	N	L	P	Y	I	T	A	D	A	T	G	P	K	H	M	N	I	K	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Sequence		.	.	N	A	I	D	V	F	A	R	E	L	G	L	G	F	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	P	K	V	E	K	L	A	E	K	G	E	K	Y	I	E	L	P	Y	A	V	K	G	.	.	.	.	M	D	L	S	F	S	G	L	L	T	E	A	I	R	K	Y	R	S	G
Template Known Secondary structure		.	.										T	T			S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T			S										T	.	.	.	.	T																	T
Template Predicted Secondary structure		.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template SS confidence
				156	.	.	.	160	.	.	.	.	.	.	.	.	.	170																	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.					.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
			300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.				.	.	360	.	.	.	.	.	.	.				.	.	370	.
Predicted Secondary structure		.													.																																															.	.	.											.	.	.
Query SS confidence		.													.																																															.	.	.											.	.	.
Query Sequence		.	V	T	R	A	K	L	E	S	L	V	E	D	.	L	V	N	R	S	I	E	P	L	K	V	A	L	Q	D	A	G	L	S	V	S	D	I	D	D	V	I	L	V	G	G	Q	T	R	M	P	M	V	Q	K	K	V	A	E	F	F	.	.	.	G	K	E	P	R	K	D	V	N	P	.	.	.	D	E	A	V
Query Conservation		.													.																																															.	.	.											.	.	.
Alig confidence		.													.																					.	.	.	.	.																						.	.	.											.	.	.
Template Conservation																																				.	.	.	.	.
Template Sequence		K	Y	R	V	E	D	L	A	Y	S	F	Q	E	T	A	F	A	A	L	V	E	V	T	E	R	A	V	A	H	T	E	K	D	E	.	.	.	.	.	V	V	L	V	G	G	V	A	A	N	N	R	L	R	E	M	L	R	I	M	T	E	D	R	G	I	K	F	F	V	P	P	Y	D	L	C	R	D	N	G	A
Template Known Secondary structure			S																															S		.	.	.	.	.					S	G	G	G	G																T								G	G	G	T	S	S		S
Template Predicted Secondary structure																																				.	.	.	.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.						.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	G	A	A	V	Q	G	G	V	L	T	G	D	V	K	D	V	L	L	L	D	V	T	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	I	A	Y	T	G	L	R	M	Y	K	A	G	I	S	F	R	L	E	E	T	I	V	K	Q	K
Template Known Secondary structure													T	T					G	G	G	G				T	T
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions