Job Description P0A6Y8 Confidence 99.91% Date Thu Jan 5 11:04:15 GMT 2012 Rank 24 Aligned Residues 308 % Identity 17% Template c1mwmA_ PDB info PDB header:structural protein Chain: A: PDB Molecule:parm; PDBTitle: parm from plasmid r1 adp form Resolution 2.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																																		.	.	.
Query SS confidence																																																																		.	.	.
Query Sequence		I	I	G	I	D	L	G	T	T	N	S	C	V	A	I	M	D	G	T	T	P	R	V	L	E	N	A	E	G	D	R	T	T	P	S	I	I	A	Y	T	Q	D	G	E	T	L	V	G	Q	P	A	K	R	Q	A	V	T	N	P	Q	N	T	L	F	.	.	.	A	I	K	R	L	I	G	R	R	F	Q	D	E
Query Conservation																																																																		.	.	.
Alig confidence																											.	.	.	.	.	.	.	.																																.	.	.
Template Conservation																											.	.	.	.	.	.	.	.
Template Sequence		L	V	F	I	D	D	G	S	T	N	I	K	L	Q	W	Q	E	S	D	G	T	I	K	Q	H	.	.	.	.	.	.	.	.	I	S	P	N	S	F	K	R	E	W	A	V	S	F	G	D	K	K	V	F	N	Y	T	L	N	G	E	Q	Y	S	F	D	P	I	S	P	D	T	N	I	A	W	Q	Y	S	D	V
Template Known Secondary structure									S	S									T	T	S						.	.	.	.	.	.	.	.								S	S					S	S	S	S							S	S	S														T	G	G	G	G	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.									.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	Q	R	D	V	S	I	M	P	F	K	I	I	A	A	D	N	G	D	A	W	V	E	V	K	G	Q	K	M	A	P	P	Q	I	S	A	E	V	L	K	K	M	K	K	T	A	E	D	Y	L	G	E	P	V	T	E	A	V	I	T	V	P	A	Y	F	N	D	A	Q	R	Q	A	T	K	D	A	G	R	I
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	V	V	A	V	H	H	A	L	L	T	S	G	L	P	V	S	E	V	D	I	V	C	T	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	E	Y	Y	D	R	N	N	Q	P	N	T	E	N	I	E	R	K	K	A	N	F	R	K	K	I	T	L	N	G	G	D	T
Template Known Secondary structure												T	S	S			S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					B		T	T	S		B												T	T	S					T	T	B
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.																					.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	L	E	V	K	R	I	I	N	E	P	T	A	A	A	L	A	Y	G	L	D	K	G	T	G	N	R	T	I	A	V	Y	D	L	G	G	G	T	F	D	I	S	I	I	E	I	D	E	V	D	G	E	K	T	F	E	V	L	A	T	N	G	D	T	H	L	G	G	E	D	F	D	S	R	L	I	N	Y	L
Query Conservation
Alig confidence																								.																											.	.	.	.	.	.
Template Conservation																								.																											.	.	.	.	.	.
Template Sequence		F	T	I	K	D	V	K	V	M	P	E	S	I	P	A	G	Y	E	V	L	Q	E	.	L	D	E	L	D	S	L	L	I	I	D	L	G	G	T	T	L	D	I	S	Q	V	M	G	K	L	.	.	.	.	.	.	S	G	I	S	K	I	Y	G	D	S	S	L	G	V	S	L	V	T	S	A	V	K	D	A	L
Template Known Secondary structure												S										T	T	.	S		T	T										S	S									G	G	G	.	.	.	.	.	.										T	T														T
Template Predicted Secondary structure																								.																											.	.	.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.							.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	E	F	K	K	D	Q	G	I	D	L	R	N	D	P	L	A	M	Q	R	L	K	E	A	A	E	K	A	K	I	E	L	S	S	A	Q	Q	T	D	V	N	L	P	Y	I	T	A	D	A	T	G	P	K	H	M	N	I	K	V	T	R	A	K	L	E	S	L	V	E	D	L	V	N	R	S	I	E	P	L
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	A	R	T	K	G	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	A	D	D	I	I	I	H	R	K	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Y	L	K	Q	R	I	N	D	E	N	K	I	S	I	V	T	E	A	M	N	E	A	L	R	K	L
Template Known Secondary structure		T			T	T	G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S		S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.															220	.	.	.	.	.	.	.	.	.	230	.	.																		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360				.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		K	V	A	L	Q	D	A	G	L	S	V	S	D	I	D	D	V	I	L	V	G	G	Q	T	R	M	P	M	V	Q	K	K	V	A	E	F	F	G	K	E	.	.	.	P	R	K	D	V	N	P	D	E	A	V	A	I	G	A	A	V	Q	G
Query Conservation																																										.	.	.
Alig confidence																												.	.													.	.	.
Template Conservation																												.	.
Template Sequence		E	Q	R	V	L	N	T	L	N	E	F	S	G	Y	T	H	V	M	V	I	G	G	G	A	E	L	.	.	I	C	D	A	V	K	K	H	T	Q	I	R	D	E	R	F	F	K	T	N	N	S	Q	Y	D	L	V	N	G	M	Y	L	I	G
Template Known Secondary structure										T	T			S								S	T	T				.	.										T			G	G	G					S		G	G	G
Template Predicted Secondary structure																												.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.			.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions