 |
Job Description | P17802 | Confidence | 99.39% | Date | Thu Jan 5 11:36:16 GMT 2012 |
Rank | 58 | Aligned Residues | 120 |
% Identity | 13% | Template | c3sonB_ |
PDB info |
PDB header:hydrolase | Chain: B: PDB Molecule:hypothetical nudix hydrolase; |
PDBTitle: crystal structure of a hypothetical nudix hydrolase (lmof2365_2679)2 from listeria monocytogenes (atcc 19115) at 1.70 a resolution
|
Resolution | 1.71 Å |
|
 |
  |   |
226 | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | |
|
|
. | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | |
|
|
|
|
|
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
| . | . | . |
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |
|
|  |  |  |  |  |
|
|
| . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
Query Sequence |   |
Q | T | L | P | E | R | T | G | Y | F | L | L | L | Q | H | E | D | E | V | L | L | A | Q | R | P | P | S | G | L | W | . |
. |
. |
G | G | L | Y | C | F | P | Q | F | A | D | E | E | S | L | R | Q | W | L | A | Q | R | Q | I | A | A | D | N | L | T | Q | L | T | A | F | R | H | T | F | S | H | . |
. |
. |
. |
. |
. |
Query Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |
|
|
|   |
|
|   |   |   |
|
|   | . | . | . |
|
|   |   |
|
|
|
|   |   |   |
|
|   |   |
|
|   |   |
|
|   |
|
|   |
|   |   |   |   |   |
|   |   |
|   |
|   |   |
|
| . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
Template Conservation |   |
  |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |
|   |   |
|
|
|   |
|
|   |
|
|
|   |   |   |
|
|   |
|
|   |   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
Q | P | F | Q | V | L | V | I | P | F | I | K | T | E | A | N | Y | Q | F | G | V | L | H | R | T | D | A | D | V | W | Q | F | V | A | G | G | G | E | D | E | E | A | I | S | E | T | A | K | R | E | S | I | E | E | L | N | L | D | V | D | V | K | X | Y | S | L | D | S | H | A | S | I | P | N | F | H | F | S | F | N |
Template Known Secondary structure |   |
. |
|
|  |  |  |  |  |  |  |  |  |
| S | S |
|  |  |  |  |  |  |  |
| S | S | S | S |
|  |  |
|  |  |  |  |
|
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |  | G | G | G | T |
| S | S |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
  |
  |   |
|
|
297 | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | |
|
|
|
. | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . |
Predicted Secondary structure |   |
. | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
F | H | L | D | I | V | P | M | W | L | P | V | S | S | . |
. |
. |
. |
F | T | G | C | M | D | E | G | N | A | L | W | Y | N | L | A | Q | P | P | S | V | G | L | A | A | P | V | E | R | L | L | Q | Q | L | R |
Query Conservation |   |
. | . |   |   |   |   |
|   |   |   |   |   |   |   |   |   | . | . | . | . |   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |   |
|
|   |   |
|   |
|
|   |   |   |
|
|
|
|   |   |
|
|
Alig confidence |   |
. | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |
Template Sequence |   |
K | P | Y | V | V | P | E | Y | C | F | A | I | D | L | T | S | C | S | Y | Q | V | T | L | S | L | E | H | S | E | L | R | W | V | S | Y | E | S | A | I | Q | L | L | E | W | D | S | N | K | T | A | L | Y | E | L | N |
Template Known Secondary structure |   |
S |
| S |  |  |  |  |  |  |  |  |  |  |
| T | T |
|
|
|
|
|
|
| B | T | T | B | S |  |  |  |  |  |
|  |  |  |  |  |  |  | B |
|
|  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|