|   |
34 | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | |
. | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | |
. | . | . | . | 110 | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
| . |
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|  | . |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
Query Sequence |   |
Y | P | P | Y | N | V | E | L | V | D | E | N | H | Y | R | I | A | I | A | V | A | G | F | A | E | S | E | L | E | I | T | A | Q | D | . |
N | L | L | V | V | K | G | A | H | A | D | E | Q | K | E | R | T | Y | L | Y | Q | G | I | A | E | R | N | F | E | R | K | F | Q | L | A | E | N | I | . |
H | V | R | G | A | N |
Query Conservation |   |
  |
|
|   |   |
|   |   |
|   |
|   |   |   |   |
|   |   |   |
|
|
|   |   |   |
|
|
|   |
|   |   |   |   | . |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|
|   |   |   | . |
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|
|
| . |   |
|   |   |   |   |   |   |
|   |   |   |
|
|
|
|   |   |
|
|
|   |
|   |
|   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|   |
|   |
Template Sequence |   |
Y | P | P | V | D | M | . |
Y | E | E | G | G | Y | L | V | V | V | A | D | L | A | G | F | N | K | E | K | I | K | A | R | V | S | G | Q | N | E | L | I | I | E | A | E | R | E | I | T | E | P | G | V | K | Y | L | T | Q | R | P | K | Y | V | R | K | V | I | R | L | P | Y | N | V | A | K | D | A | E | I | S | G | K |
Template Known Secondary structure |   |
| S |
|  |  |  | . |  |  |  | T | T |  |  |  |  |  |  |  |
|
| S |
|
| G | G | G |
|  |  |  |  |  | T | T | T |  |  |  |  |  |  |  |
|
|
|
|
|
| S |
|
| S |
|
|
| S |
| S |  |  |  |  |  |  |  |
| S | S |  |  |
| T | T |
|
|
|  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  | . |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
24 | . | . | . | . | . | |
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . |
  |
  |   |
112 | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | V | N | G | L | L | Y | I | D | L | E | R | V | I | P | E | A | K | K | P | R | R | I | E |
Query Conservation |   |
  |   |
|
|
|
|   |
|
|
|
|
|   |   |   |
|   |   |
|   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|
|
|   |
|   |
|
|
|   | . | . | . |   |   |   |   |   |
|
|
|
Template Sequence |   |
Y | E | N | G | V | L | T | I | R | I | P | I | A | . |
. |
. |
G | T | S | V | F | K | F | E |
Template Known Secondary structure |   |
 |  | T | T |  |  |  |  |  |  |  | G | G | . | . | . | G |  |  |
| S |
|
|
|
Template Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |  |  |
|
| . | . | . |
|
|
|
|  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
103 | . | . | . | . | . | . | 110 | . | . | . | . | . | |
|
|
. | . | . | . | 120 | . | . | . |
  |