 |
Job Description | P76421 | Confidence | 13.06% | Date | Thu Jan 5 12:22:55 GMT 2012 |
Rank | 46 | Aligned Residues | 120 |
% Identity | 14% | Template | c2dskA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:chitinase; |
PDBTitle: crystal structure of catalytic domain of hyperthermophilic chitinase2 from pyrococcus furiosus
|
Resolution | 1.50 Å |
|
 |
  |   |
70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | |
|
|
|
. | . | . | . | 130 | . | |
|
|
. | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  | . | . | . | . | . |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . |  |  |  |  |  |  | . | . | . |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
Query Sequence |   |
I | D | V | S | R | W | Q | E | R | I | D | W | Q | R | V | A | K | M | R | D | N | G | I | R | L | Q | F | A | F | I | . |
. |
. |
. |
. |
K | A | T | E | G | E | K | L | V | D | P | Y | F | S | R | N | W | Q | L | S | R | E | N | G | L | L | . |
. |
. |
. |
R | G | A | Y | H | Y | . |
. |
. |
F | S | P | S | V | S |
Query Conservation |   |
|
|
|
|   |   |
|
|   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |
|
|   |
|
|
|
| . | . | . | . | . |
|
|
|
|
|   |   |   |   |
|   |   |
|   |   |
|   |   |   |
|   |   |
|
|
|   | . | . | . | . |
|
|
|
|
|
| . | . | . |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |
|
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
I | D | M | S | L | S | V | H | K | P | L | V | E | Y | A | K | L | T | G | T | K | Y | F | T | L | A | F | I | L | Y | S | S | V | Y | N | G | P | A | W | A | G | S | I | P | L | E | K | F | V | D | E | V | R | E | L | R | E | I | G | G | E | V | I | I | A | F | G | G | A | V | G | P | Y | L | C | Q | Q | A | S | T |
Template Known Secondary structure |   |
 |  | T | T |
| T | T |
|
|
|  |  |  |  |  |  |  |  | S |
| S |  |  |  |  |  |  |  |  |  |  | T | T | T | T |  |  |  |  | T | T | T | B |
| G | G | G | G |  |  |  |  |  |  |  |  | T | T | T |
|  |  |  |  |  |  |  |  | S | S |
|
|
|  |  |  |  |
| S | S |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
422 | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . |
  |
  |   |
138 | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | S | V | Q | A | R | L | F | L | Q | T | V | D | F | S | Q | G | D | F | P | A | V | L | D | V | E | E | R | G | K | L | S | A | K | E | L | R | K | R | V | S | Q | W | L | K | M | V | E | K | S | T | G | K | K | P | I | I | Y | S |
Query Conservation |   |
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |
|
|   |   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|   |   |
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |   |   |   |   |
|   |   |
|
|   |
|
| . |
|
|
|
|   |
|   |
|   | . | . | . | . | . | . |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
P | E | Q | L | A | E | W | Y | I | K | V | I | D | T | Y | N | A | T | Y | . |
L | D | F | D | I | E | A | G | I | . |
. |
. |
. |
. |
. |
D | A | D | K | L | A | D | A | L | L | I | V | Q | R | E | R | P | W | V | K | F | S | F | T |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S |  | . |  |  |  |  |  |
| S |
|
| . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | T | T |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  | . |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
502 | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | |
. | . | . | . | . | . | . | . | . | |
|
|
|
|
|
530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|