Job Description P0ADT5 Confidence 83.38% Date Thu Jan 5 11:21:48 GMT 2012 Rank 72 Aligned Residues 194 % Identity 9% Template c3r23B_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of d-alanine--d-alanine ligase from bacillus2 anthracis Resolution 2.50 Å

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		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		L	L	H	L	T	C	C	R	D	T	V	E	D	R	G	.	.	.	T	I	Q	Y	L	Q	D	C	A	T	E	A	E	I	A	T	E	F	L	Y	I	D	D	I	G	L	G	E	K	G	Q	F	T	D	L	Q	D	Q	V	I	S	N	L	F	K	L	Y	P	W	E	F	M	L	R	E	M	F	S	T	K	L	E
Query Conservation																	.	.	.
Alig confidence																	.	.	.																					.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.
Template Sequence		R	I	G	V	I	X	G	G	V	S	S	E	K	Q	V	S	I	X	T	G	N	E	X	I	A	N	L	D	K	N	K	Y	E	I	V	P	I	T	.	.	.	.	.	.	L	N	E	K	X	D	L	I	E	K	A	K	D	I	D	F	A	L	L	A	L	H	G	K	Y	G	E	D	G	T	V	Q	G	T	L	E
Template Known Secondary structure										S																		S		T	T	T								.	.	.	.	.	.		S	S	G	G	G					G	G	G		S								S					S	S
Template Predicted Secondary structure																																								.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.							40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.					.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure									.	.																				.	.	.	.
Query SS confidence									.	.																				.	.	.	.
Query Sequence		D	A	G	V	R	W	L	.	.	E	P	A	W	K	S	I	I	S	N	K	A	L	L	P	L	L	W	E	.	.	.	.	M	F	P	N	H	P	N	L	L	P	A	Y	F	A	E	D	D	H	P	Q	M	E	K	Y	V	V	K	P	I	F	S	R	E	G	A	N	V	S	I	I	E	N	G	K	T	I	E	A
Query Conservation									.	.																				.	.	.	.
Alig confidence									.	.																				.	.	.	.
Template Conservation
Template Sequence		S	L	G	I	P	Y	S	G	S	N	X	L	S	S	G	I	C	X	D	K	N	I	S	K	K	I	L	R	Y	E	G	I	E	T	P	D	W	I	E	L	T	K	X	E	D	L	N	F	D	E	L	D	K	L	G	F	P	L	V	V	K	P	N	S	G	G	V	K	I	V	Y	D	K	D	E	L	I	S	X	L
Template Known Secondary structure			T	T			B	S	S	S																					T	T											S	S	S								T	T	T		S	S						S									S	T	T
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	G	P	Y	G	E	E	G	M	I	V	Q	Q	F	H	P	L	P	K	F	G	D	S	Y	M	L	I	G	S	W	L	V	N	D	Q	P	A	G	I	G	I	R	E	D	R	A	L	I	T	Q	D	M	S	R	F
Query Conservation
Alig confidence																			.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.
Template Sequence		E	T	V	F	E	W	D	S	E	V	V	I	E	K	Y	I	K	.	.	.	.	.	.	.	G	E	E	I	T	C	S	I	F	D	G	K	Q	L	P	I	I	S	I	R	H	A	A	E	F	F	D	Y	N	A	K	Y
Template Known Secondary structure									S										.	.	.	.	.	.	.	S									T	T																T	T	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.								.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions