Job Description P0ADT5 Confidence 96.95% Date Thu Jan 5 11:21:48 GMT 2012 Rank 27 Aligned Residues 171 % Identity 13% Template c3i12A_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: the crystal structure of the d-alanyl-alanine synthetase a from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2 Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.					.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																	.	.	.																								.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.																								.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	Q	L	L	H	L	T	C	C	R	D	T	V	E	.	.	.	D	R	G	T	I	Q	Y	L	Q	D	C	A	T	E	A	E	I	A	T	E	F	L	Y	.	.	.	.	I	D	D	I	G	L	G	E	K	G	Q	F	T	D	L	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																	.	.	.																								.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.																								.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	K	L	R	V	G	I	V	F	G	G	K	S	A	E	H	E	V	S	L	Q	S	A	K	N	I	V	D	A	I	D	K	T	R	F	D	V	V	L	L	G	I	D	K	A	G	Q	W	H	V	N	D	A	E	N	Y	L	Q	N	A	D	D	P	A	H	I	A	L	R	P	S	A	I	S	L	A	Q	V	P	G
Template Known Secondary structure													S	S	T	T															S		T	T	T										T	T	S							S	S	S	S	B	S	S	T	T		T	T	T			B				S		B					T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
																	225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.										.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.															.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.															.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	I	S	N	L	F	K	L	Y	P	W	E	F	M	L	R	E	M	F	S	T	K	L	E	D	A	G	V	R	W	L	E	P	A	W	K	.	.	S	I	I	S	N	K	A	L	L	P	L	L	W	E	.	.	.	.	.	.	.	.	.	M	F	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.															.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.															.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	H	Q	H	Q	L	I	N	A	Q	N	G	Q	P	L	P	T	V	D	V	I	F	P	I	V	H	G	T	L	G	E	D	G	S	L	Q	G	M	L	R	V	A	N	L	P	F	V	G	S	D	V	L	S	S	A	A	C	M	D	K	D	V	A	K	R	L	L	R	D	A	G	L	N	I	A	P	F	I	T	L
Template Known Secondary structure			S	S	S					T	T	T			B					S								S	T	T	T	T	S	S									T	T			B	S	S																						T	T			B
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.			.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		N	H	P	N	L	L	P	A	Y	F	A	E	D	D	H	P	Q	M	E	K	Y	V	V	K	P	I	F	S	R	E	G	A	N	V	S	I	I	E	N	G	K	T	I	E	A	A	E	G	P	Y	.	.	G	E	E	G	M	I	V	Q	Q	F	H	P
Query Conservation																																																				.	.
Alig confidence																																																				.	.
Template Conservation
Template Sequence		T	R	T	N	R	H	A	F	S	F	A	E	V	E	S	R	L	G	L	P	L	F	V	K	P	A	N	Q	G	S	S	V	G	V	S	K	V	A	N	E	A	Q	Y	Q	Q	A	V	A	L	A	F	E	F	D	H	K	V	V	V	E	Q	G	I	K
Template Known Secondary structure			T	T	T	G	G	G												S	S						T	T			T	T	T	T					S	S																S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions