Job Description P0ADT5 Confidence 96.67% Date Thu Jan 5 11:21:48 GMT 2012 Rank 30 Aligned Residues 171 % Identity 9% Template c1e4eB_ PDB info PDB header:ligase Chain: B: PDB Molecule:vancomycin/teicoplanin a-type resistance protein vana; PDBTitle: d-alanyl-d-lacate ligase Resolution 2.5 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210															.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.
Query Sequence		G	F	Q	L	L	H	L	T	C	C	R	D	T	V	E	.	.	.	D	R	G	T	I	Q	Y	L	Q	D	C	A	T	E	A	E	I	A	T	E	F	L	Y	I	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	L	G	E	K	G	Q	F	T	D	L	Q	D	.	.	.	.	.	.	.	.
Query Conservation																	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.
Alig confidence																	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	R	I	K	V	A	I	L	F	G	G	C	S	E	E	H	D	V	S	V	K	S	A	I	E	I	A	A	N	I	N	K	E	K	Y	E	P	L	Y	I	G	I	T	K	S	G	V	W	K	M	C	E	K	P	C	A	E	W	E	N	E	N	C	Y	S	A	V	L	S	P	D	K	K	M	H	G	L	L	V	K
Template Known Secondary structure													S	S	T	T													T	T	S		T	T	T										T	T	S						S	S		S	T	T				T	T										T	T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
									225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																						.	.															.	.	.
Query SS confidence		.	.	.	.	.	.	.																																						.	.															.	.	.
Query Sequence		.	.	.	.	.	.	.	Q	V	I	S	N	L	F	K	L	Y	P	W	E	F	M	L	R	E	M	F	S	T	K	L	E	D	A	G	V	R	W	L	E	P	A	W	K	.	.	S	I	I	S	N	K	A	L	L	P	L	L	W	E	.	.	.	M	F	P	N	H	P	N	L	L	P	A	Y	F	A	E	D	D
Query Conservation		.	.	.	.	.	.	.																																						.	.															.	.	.
Alig confidence		.	.	.	.	.	.	.																																						.	.															.	.	.
Template Conservation
Template Sequence		K	N	H	E	Y	E	I	N	H	V	D	V	A	F	S	A	L	H	G	K	S	G	E	D	G	S	I	Q	G	L	F	E	L	S	G	I	P	F	V	G	C	D	I	Q	S	S	A	I	C	M	D	K	S	L	T	Y	I	V	A	K	N	A	G	I	A	T	P	A	F	W	V	I	N	K	D	D	R	P	V	A
Template Known Secondary structure		S	S	S	S							S								S	T	T	T	T	S	S										T			B	S	S											S											T	T											S	S					G
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.			.	.	.	.	.	.	.	340
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		H	P	Q	M	E	K	Y	V	V	K	P	I	F	S	R	E	G	A	N	V	S	I	I	E	N	G	K	T	I	E	A	A	E	G	P	Y	G	E	E	G	.	.	M	I	V	Q	Q	F	H	P
Query Conservation																																										.	.
Alig confidence																																										.	.
Template Conservation
Template Sequence		A	T	F	T	Y	P	V	F	V	K	P	A	R	S	G	S	S	F	G	V	K	K	V	N	S	A	D	E	L	D	Y	A	I	E	S	A	R	Q	Y	D	S	K	I	L	I	E	Q	A	V	S
Template Known Secondary structure		G	G	S		S	S						S	S			T	T	T	T						S	G	G	G									T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions