Return to main results Retrieve Phyre Job Id

Job DescriptionP42915
Confidence88.64%DateThu Jan 5 12:02:14 GMT 2012
Rank19Aligned Residues69
% Identity13%Templated1nkga1
SCOP infoPrealbumin-like Starch-binding domain-like Rhamnogalacturonase B, RhgB, middle domain
Resolution1.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   755....760.........770.........780.........790.........800.........810.........820....
Predicted Secondary structure 
































Query SS confidence 





































































Query Sequence  RVLVTVSDRNGKPLPFGALASNDDTGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDS
Query Conservation    
  
    
 


 

 
    
     

  
 


 

      
 
 

      
         
Alig confidence 












.























































Template Conservation 



 
 
     .   
 
          

  
 
 
  
  
 
 
 
   
       
 
  
 
Template Sequence  KVAGTASGADSSM. DWVVHWYNDAAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYAVATSSVTVSAGST
Template Known Secondary structure  SS
TTS.

SS


TT



B
STT
TT
Template Predicted Secondary structure 





.

























Template SS confidence 





































































   259260.........270. ........280.........290.........300.........310.........320.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions