 |
| Job Description | P0AFX4 | | Confidence | 3.16% | Date | Thu Jan 5 11:27:29 GMT 2012 |
| Rank | 97 | Aligned Residues | 26 |
| % Identity | 23% | Template | c2vi6F_ |
| PDB info |
PDB header:transcription | Chain: F: PDB Molecule:homeobox protein nanog; |
PDBTitle: crystal structure of the nanog homeodomain
|
| Resolution | 2.6 Å |
|
| | |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure | |
 | | | | | | | | | |
|
| | | | | | | | | | | | | | |
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
N | Q | L | D | N | L | T | E | R | V | R | G | S | N | K | L | V | D | R | W | L | H | V | R | K | H |
| Query Conservation | |
| | | | | | |
|
|
|
|
| | | |
|
|
| |
|
| | |
|
| |
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
| |
| | |
|
| | |
|
|
| | | | |
| | |
|
|
|
|
|
| |
| Template Sequence | |
Q | Q | M | Q | E | L | S | S | I | L | N | L | S | Y | K | Q | V | K | T | W | F | Q | N | Q | R | M |
| Template Known Secondary structure | |
| | | | | | | | | | T |
|
| | | | | | | | | | | | | |
| Template Predicted Secondary structure | |
| | | | | | | | | |
|
|
| | | | | | | | | | | | | |
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
29 | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
