 |
Job Description | P0AFX4 | Confidence | 3.65% | Date | Thu Jan 5 11:27:29 GMT 2012 |
Rank | 75 | Aligned Residues | 23 |
% Identity | 35% | Template | c2rklB_ |
PDB info |
PDB header:lipid transport | Chain: B: PDB Molecule:vacuolar protein sorting-associated protein vta1; |
PDBTitle: crystal structure of s.cerevisiae vta1 c-terminal domain
|
Resolution | 1.50 Å |
|
  |   |
102 | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | I | M | D | Y | Y | D | S | S | L | E | T | A | I | D | H | D | N | Y | L | E | F | Q | Q | V | L | S | D | I | G |
Query Conservation |   |
  |   |
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|
|
| . | . |
|   |
|
|   |   |   | . | . | . | . | . |
|   |
|
|
|   |
|
|   |
Template Sequence |   |
S | A | L | N | Y | E | D | . |
. |
L | P | T | A | K | D | E | . |
. |
. |
. |
. |
L | T | K | A | L | D | L | L | N |
Template Known Secondary structure |   |
 |  |  |  | T | T |
| . | . |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|  |  |  | . | . |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
306 | . | . | . | 310 | . | . | |
|
. | . | . | . | . | . | . | |
|
|
|
|
320 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|