Job Description P0AFX4 Confidence 100.00% Date Thu Jan 5 11:27:29 GMT 2012 Rank 1 Aligned Residues 151 % Identity 100% Template c2p7vA_ PDB info PDB header:transcription Chain: A: PDB Molecule:regulator of sigma d; PDBTitle: crystal structure of the escherichia coli regulator of sigma 70, rsd,2 in complex with sigma 70 domain 4 Resolution 2.60 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	N	Q	L	D	N	L	T	E	R	V	R	G	S	N	K	L	V	D	R	W	L	H	V	R	K	H	L	L	V	A	Y	Y	N	L	V	G	I	K	P	G	K	E	S	Y	M	R	L	N	E	K	A	L	D	D	F	C	Q	S	L	V	D	Y	L	S	A	G	H	F	S	I	Y	E	R	I	L	H	K	L
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.
Template Sequence		M	L	N	Q	L	D	N	L	T	E	R	V	R	G	S	N	K	L	V	D	R	W	L	H	V	R	K	H	L	L	V	A	Y	Y	N	L	V	G	I	K	P	G	.	.	.	.	.	.	.	N	E	K	A	L	D	D	F	C	Q	S	L	V	D	Y	L	S	A	G	H	F	S	I	Y	E	R	I	L	H	K	L
Template Known Secondary structure														T	T	S																							S					.	.	.	.	.	.	.																						T							T	T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.								.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	N	G	Q	L	A	R	A	A	K	I	W	P	Q	L	E	A	N	T	Q	Q	I	M	D	Y	Y	D	S	S	L	E	T	A	I	D	H	D	N	Y	L	E	F	Q	Q	V	L	S	D	I	G	E	A	L	E	A	R	F	V	L	E	D	K	L	I	L	L	V	L	D	A	A	R	V	K	H	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	N	G	Q	L	A	R	A	A	K	I	W	P	Q	L	E	A	N	T	Q	Q	I	M	D	Y	Y	D	S	S	L	E	T	A	I	D	H	D	N	Y	L	E	F	Q	Q	V	L	S	D	I	G	E	A	L	E	A	R	F	V	L	E	D	K	L	I	L	L	V	L	D	A	A	R	V	K	H	P	A
Template Known Secondary structure			S																																			S																																							S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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