Job Description P22523 Confidence 93.53% Date Wed Jan 25 15:20:42 GMT 2012 Rank 292 Aligned Residues 320 % Identity 8% Template c2oevA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: crystal structure of alix/aip1 Resolution 3.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		787	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.												.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	E	S	L	H	A	E	R	E	V	L	S	E	R	F	A	T	L	S	F	D	V	Q	K	T	Q	R	L	H	Q	A	F	S	R	F	I	G	S	H	L	A	V	A	F	E	S	D	P	.	.	.	.	.	.	.	.	.	.	.	E	A	E	I	R	Q	L	N	S	R	R	V	E	L	E	R	A	L	S	N	H
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	S	V	Q	Q	S	L	A	A	Y	N	Q	R	K	A	D	L	V	N	R	S	I	A	Q	M	R	E	A	T	T	L	A	N	G	V	L	A	S	L	N	L	P	A	A	I	E	D	V	S	G	D	T	V	P	Q	S	I	L	T	K	S	R	S	V	I	E	Q	G	G	I	Q	T	V	D	Q	L	I	K	E	L
Template Known Secondary structure																																								T	T	T	T	T	T	T	S		S	S	T	T	S														T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
		856	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.			.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		E	N	D	N	Q	Q	Q	R	I	Q	F	E	Q	A	K	E	G	V	T	A	L	N	R	I	L	P	R	L	N	L	L	A	D	D	S	L	A	D	R	.	.	V	D	E	I	R	E	R	L	D	E	A	Q	E	A	A	R	F	V	Q	Q	F	G	N	Q	L	A	K	L	E	P	I	V	S	V	L	Q	S	D	P
Query Conservation																																									.	.
Alig confidence																																									.	.
Template Conservation
Template Sequence		P	E	L	L	Q	R	N	R	E	I	L	D	E	S	L	R	L	L	D	E	E	E	A	T	D	N	D	L	R	A	K	F	K	E	R	W	Q	R	T	P	S	N	E	L	Y	K	P	L	R	A	E	G	T	N	F	R	T	V	L	D	K	A	V	Q	A	D	G	Q	V	K	E	C	Y	Q	S	H	R	D	T	I
Template Known Secondary structure																															T	T	S	S	S	S			S							S	S																													T	T
Template Predicted Secondary structure
Template SS confidence
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
		934	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	F	E	Q	L	K	E	D	Y	A	Y	S	Q	Q	M	Q	R	D	A	R	Q	Q	A	F	A	L	T	E	V	V	Q	R	R	A	H	F	S	Y	S	D	S	A	E	M	L	S	G	N	S	D	L	N	E	K	L	R	E	R	L	E	Q	A	E	A	E	R	T	R	A	R	E	A	L	R	G	H	A	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	L	C	K	P	E	P	E	L	N	A	A	I	P	S	A	N	P	A	K	T	M	Q	G	S	E	V	V	N	V	L	K	S	L	L	S	N	L	D	E	V	K	K	E	R	E	G	L	E	N	D	L	K	S	V	N	F	D	M	T	S	K	F	L	T	A	L	A	Q	D	G	V	I	N	E	E	A	L	S
Template Known Secondary structure					T	S									S							S	S		S	S																																														S	S	S
Template Predicted Secondary structure
Template SS confidence
		521	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
		1014	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.		.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		L	S	Q	Y	N	Q	V	L	A	S	L	K	S	S	Y	D	T	K	K	E	L	L	N	D	L	Q	R	E	L	Q	D	I	G	V	R	A	D	S	G	A	E	.	E	R	A	R	I	R	R	D	E	L	H	A	Q	L	S	N	N	R	S	R	R	N	Q	L	E	K	A	L	T	F	C	E	A	E	M	D	N	L
Query Conservation																																											.
Alig confidence																																											.
Template Conservation
Template Sequence		V	T	E	L	D	R	V	Y	G	G	L	T	T	K	V	Q	E	S	L	K	K	Q	E	G	L	L	K	N	I	Q	V	S	H	Q	E	F	S	K	M	K	Q	S	N	N	E	A	N	L	R	E	E	V	L	K	N	L	A	T	A	Y	D	N	F	V	E	L	V	A	N	L	K	E	G	T	K	F	Y	N	E	L
Template Known Secondary structure									T																																S			S	S
Template Predicted Secondary structure
Template SS confidence
		601	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680
		1093	.	.	.	.	.	.	1100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	K	L	R	K	L	E	R	D	Y	F	E	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	I	L	V	R	F	Q	N	K	C	S	D	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		681	.	.	.	.	.	.	.	.	690	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions