Job Description P22523 Confidence 94.23% Date Wed Jan 25 15:20:42 GMT 2012 Rank 224 Aligned Residues 449 % Identity 8% Template c1sjjB_ PDB info PDB header:contractile protein Chain: B: PDB Molecule:actinin; PDBTitle: cryo-em structure of chicken gizzard smooth muscle alpha-2 actinin Resolution 20.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		803	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		T	L	S	F	D	V	Q	K	T	Q	R	L	H	Q	A	F	S	R	F	I	G	S	H	L	A	V	A	F	E	S	D	P	E	A	E	I	R	Q	L	N	S	R	R	V	E	L	E	R	A	L	S	N	H	E	N	D	N	Q	Q	Q	R	I	Q	F	E	Q	A	K	E	G	V	T	A	L	N	R	I	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																																																															.	.	.
Template Conservation
Template Sequence		E	N	E	Q	L	M	E	D	Y	E	K	L	A	S	D	L	L	E	W	I	R	R	T	I	P	W	L	E	N	R	A	P	E	N	T	M	Q	A	M	Q	Q	K	L	E	D	F	R	D	Y	R	R	L	H	K	P	P	K	V	Q	E	K	C	Q	L	E	I	N	F	N	T	L	Q	T	K	L	R	L	S	N	R
Template Known Secondary structure																																			S	S																		T																						T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
															880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	R	L	N	L	L	A	D	D	S	L	A	D	R	V	D	E	I	R	E	R	L	D	E	A	Q	E	A	A	R	F	V	Q	Q	F	G	N	Q	L	A	K	L	E	P	I	V	S	V	L	Q	S	D	P	E	Q	F	E	Q	L	K	E	D	Y	A	Y	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	A	F	M	P	S	E	G	K	M	V	S	D	I	N	N	A	W	G	G	L	E	Q	A	E	K	G	Y	E	E	W	L	L	N	E	I	R	R	L	E	R	L	D	H	L	A	E	K	F	R	Q	K	A	S	I	H	E	S	W	T	D	G	K	E	A	M	L	Q	Q	K	D	Y	E	T	A	T	L	S	E	I
Template Known Secondary structure							S	S	T	T		T	T	T												T	T	T																																T	T	T	T						T	S		T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
		947	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	M	Q	R	D	A	R	Q	Q	A	F	A	L	T	E	V	V	Q	R	R	A	H	F	S	Y	S	D	S	A	E	M	L	S	G	N	S	D	L	N	E	K	L	R	E	R	L	E	Q	A	E	A	E	R	T	R	A	R	E	A	L	R	G	H	A	A	Q	L	S	Q	Y	N	Q	V	L	A	S	L	K	S
Query Conservation
Alig confidence																											.
Template Conservation																											.
Template Sequence		K	A	L	L	K	K	H	E	A	F	E	S	D	L	A	A	H	Q	D	R	V	E	Q	I	A	.	A	I	A	Q	E	L	N	E	L	D	Y	Y	D	S	P	S	V	N	A	R	C	Q	K	I	C	D	Q	W	D	N	L	G	A	L	T	Q	K	R	R	E	A	L	E	R	T	E	K	L	L	E	T	I	D	Q
Template Known Secondary structure																T	T										.								T	T	T		T	T
Template Predicted Secondary structure																											.
Template SS confidence
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.		.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
		1027	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	D	T	K	K	E	L	L	N	D	L	Q	R	E	L	Q	D	I	G	V	R	A	D	S	G	A	E	E	R	A	R	I	R	R	D	E	L	H	A	Q	L	S	N	N	R	S	R	R	N	Q	L	E	K	A	L	T	F	C	E	A	E	M	D	N	L	T	R	K	L	R	K	L	E	R	D	Y	F	E	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Y	L	E	Y	A	K	R	A	A	P	F	N	N	W	M	E	G	A	M	E	D	L	Q	D	T	F	I	V	H	T	I	E	E	I	Q	G	L	T	T	A	H	E	Q	F	K	A	T	L	P	D	A	D	K	E	R	Q	A	I	L	G	I	H	N	E	V	S	K	I	V	Q	T	Y	H	V	N	M	A	G	T
Template Known Secondary structure										T	T	T	T	T										T	T						S	S																	T																								T	T	T			S		S
Template Predicted Secondary structure
Template SS confidence
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590
		1107	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	Q	V	V	T	A	K	A	G	W	C	A	V	M	R	M	V	K	D	N	G	V	E	R	R	L	H	R	R	E	L	A	Y	L	S	A	D	D	L	R	S	M	S	D	K	A	L	G	A	L	R	L	A	V	A	D	N	E	H	L	R	D	V	L	R	M	S	E	D	P	K	R	P	E	R	K	I	Q	F
Query Conservation
Alig confidence																																																																									.	.	.
Template Conservation																																																																									.	.	.
Template Sequence		N	P	Y	T	T	I	T	P	Q	E	I	N	G	K	W	E	H	V	R	Q	L	V	P	R	R	D	Q	A	L	M	E	E	H	A	R	Q	Q	Q	N	E	R	L	R	K	Q	F	G	A	Q	A	N	V	I	G	P	W	I	Q	T	K	M	E	E	I	G	R	I	S	I	E	M	.	.	.	H	G	T	L	E	D
Template Known Secondary structure			S	S		S																													T	T																													T	T	S	S	T	T		S	.	.	.	S	S	S	S
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
		591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.				.	.	.	.	.	.
		1187	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	A	V	Y	Q	H	L	R	E	R	I	R	Q	D	I	I	R	T	D	D	P	V	E	A	I	E	Q	M	E	I	E	L	S	R	L	T	E	E	L	T	S	R	E	Q	K	L	A	I	S	S	R	S	V	A	N	I	I	R	K	T	I	Q	R	E	Q	N	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	N	H	L	R	Q	Y	E	K	S	I	V	N	Y	K	P	K	I	D	Q	L	E	G	D	H	Q	Q	I	Q	E	A	L	I	F	D	N	K	H	T	N	Y	T	M	E	H	I	R	V	G	W	E	Q	L	L	T	T	I	A	R	T	I	N	E	V	E	N	Q	I
Template Known Secondary structure																	T															T	T	T					S	S		S																												T
Template Predicted Secondary structure
Template SS confidence
		668	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.