Job Description P22523 Confidence 96.28% Date Wed Jan 25 15:20:42 GMT 2012 Rank 90 Aligned Residues 448 % Identity 11% Template c1f5nA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:interferon-induced guanylate-binding protein 1; PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp. Resolution 1.70 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.						.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																							.	.	.	.	.
Query SS confidence																							.	.	.	.	.
Query Sequence		L	V	T	T	L	S	G	G	N	G	A	G	K	S	T	T	M	A	A	F	V	.	.	.	.	.	T	A	L	I	P	D	L	T	L	L	H	F	R	N	T	T	E	A	G	A	T	S	G	S	R	D	K	G	L	H	G	K	L	K	A	G	V	C	Y	S	M	L	D	T	I	N	S	R	H	Q	R	V	V	V
Query Conservation																							.	.	.	.	.
Alig confidence																							.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	V	A	I	V	G	L	Y	R	T	G	K	S	Y	L	M	N	K	L	A	G	K	K	K	G	F	S	L	G	S	T	V	Q	S	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	K	G	I	W	M	W	C	V	P	H	P	K	K	P	G	H	I	L	V
Template Known Secondary structure									B	T	T	S	S									T	T		S	S		S					S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S									S	S	S	T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.																									.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	V	R	L	Q	Q	V	A	G	R	D	R	K	V	D	I	K	P	F	A	I	Q	G	L	P	M	S	V	Q	P	T	Q	L	V	T	E	T	L	N	E	R	Q	A	R	V	L	P	L	N	E	L	K	D	K	L	E	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	D	T	E	G	L	G	D	V	E	K	G	D	N	Q	N	D	S	W	I	F	A	L	A	V	L	L	S	S	T	F	V	Y	N	S	I	G	T	I	N	Q	Q	A	M	D	Q	L	Y	Y	V	T	E	L	T	H	R	I	R	S	K	S	S	V	E	D	S	A	D	F	V	S	F	F	P	D	F	V	W	T
Template Known Secondary structure								B			G	G	G				T	T													S								S		S	S						T	T					T						B	S						G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
																																161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.																						180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	V	Q	F	K	Q	F	N	S	I	T	D	Y	H	S	L	M	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	G	I	I	A	R	R	L	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	D	F	S	L	D	L	E	A	D	G	Q	P	L	T	P	D	E	Y	L	T	Y	S	L	K	L	K	K	G	T	S	Q	K	D	E	T	F	N	L	P	R	L	C	I	R	K	F	F	P	K	K	K	C	F	V	F	D	R	P	V	H	R	R	K	L	A	Q	L	E	K	L	Q	D	E	E	L	D	P	E
Template Known Secondary structure				T								S	S	S												T							S																		S											S		G	G	G	G	G	G	G	G	G	S		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		190	.	.	.	.	.	.	.	.	.	200	.												.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	S	D	R	S	K	F	Y	R	L	I	.	.	.	.	.	.	.	.	.	.	.	E	A	S	L	Y	G	G	I	S	S	A	I	T	R	S	L	R	D	Y	L	L	P	E	N	S	G	V	R	K	A	F	Q	D	M	E	A	A	L	R	E	N	R	M	T	L	E	A	I	R	V	T	Q	S	D	R	D	L
Query Conservation														.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	V	Q	Q	V	A	D	F	C	S	Y	I	F	S	N	S	K	T	K	T	L	S	G	G	I	Q	V	N	G	P	R	L	E	S	L	V	L	T	Y	V	N	A	I	S	S	G	D	L	P	C	M	E	N	A	V	L	A	L	A	Q	I	E	N	S	A	A	V	Q	K	A	I	A	H	Y	E	Q	Q	M	G	Q
Template Known Secondary structure																							T	T	T				B																		T	S			B
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	H	L	I	S	E	A	T	N	Y	V	A	A	D	Y	M	R	H	A	N	E	R	R	V	H	L	D	K	A	L	E	F	R	R	E	L	H	T	S	R	Q	Q	L	A	A	E	Q	Y	K	H	V	D	M	A	R	E	L	A	E	H	N	G	A	E	G	D	L	E	A	D	Y	Q	A	A	S	D	H	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	Q	L	P	T	E	S	L	Q	E	L	L	D	L	H	R	D	S	E	R	E	A	I	E	V	F	I	R	S	S	F	K	D	V	D	H	L	F	Q	K	E	L	A	A	Q	L	E	K	K	R	D	D	F	C	K	Q	N	Q	E	A	S	S	D	R	C	S	G	L	L	Q	V	I	F	S	P	L	E	E	E
Template Known Secondary structure					S	S		S	S																											G	G	G
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	Q	T	A	L	R	Q	Q	E	K	I	E	R	Y	E	A	D	L	D	E	L	Q	I	R	L	E	E	Q	N	E	V	V	A	E	A	I	E	R	Q	Q	E	N	E	A	R	A	E	A	A	E	L	E	V	D	E	L	K	S	Q	L	A	D	Y	Q	Q	A	L	D	V	Q	Q	T	R	A	I	Q	Y	N	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	A	G	I	Y	S	K	P	G	G	Y	R	L	F	V	Q	K	L	Q	D	L	K	K	K	Y	Y	E	E	P	R	K	G	I	Q	A	E	E	I	L	Q	T	Y	L	K	S	K	E	S	M	T	D	A	I	L	Q	T	D	Q	T	L	T	E	K	E	K	E	I	E	V	E	R	V	K	A	E	S	A	Q	A
Template Known Secondary structure				T	T	T	T	S	S	T	T																			S	S				T	T												T												S	S	S
Template Predicted Secondary structure
Template SS confidence
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	A	A	L	N	R	A	K	E	L	C	H	L	P	D	L	T	A	D	C	A	A	E	W	L	E	T	F	Q	A	K	E	L	E	A	T	E	K	M	L	S	L	E	Q	K	M	S	M	A	Q	T	A	H	S	Q	F	E	Q	A	Y	Q	L	V	V	A	I	N	G	P	L	A	R	N	E	A	W	D	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	K	M	L	H	E	M	Q	R	K	N	E	Q	M	M	E	Q	K	E	R	S	Y	Q	E	H	L	K	Q	L	T	E	K	M	E	N	D	R	V	Q	L	L	K	E	Q	E	R	T	L	A	L	K	L	Q	E	Q	E	Q	L	L	K	E	G	F	Q	K	E	S	R	I	M	K	N	E	I	Q	D	L	Q	T
Template Known Secondary structure																																																																T
Template Predicted Secondary structure
Template SS confidence
		502	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.
		499
Predicted Secondary structure
Query SS confidence
Query Sequence		R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		582