Job Description P22523 Confidence 95.87% Date Wed Jan 25 15:20:42 GMT 2012 Rank 109 Aligned Residues 503 % Identity 14% Template c1ciiA_ PDB info PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia Resolution 3.00 Å

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		832	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	P	E	A	E	I	R	Q	L	N	S	R	R	V	E	L	E	R	A	L	S	N	H	E	N	D	N	Q	Q	Q	R	I	Q	F	E	Q	A	K	E	G	V	T	A	L	N	R	I	L	P	R	L	N	L	L	A	D	D	S	L	A	D	R	V	D	E	I	R	E	R	L	D	E	A	Q	E	A	A	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	D	I	E	K	R	D	K	E	I	T	A	Y	K	N	T	L	S	A	Q	Q	K	E	N	E	N	K	R	T	E	A	G	K	R	L	S	A	A	I	A	A	R	E	K	D	E	N	T	L	K	T	L	R	A	G	N	A	D	A	A	D	I	T	R	Q	E	F	R	L	L	Q	A	E	L	R	E	Y	G	F	R
Template Known Secondary structure																																																								T	T
Template Predicted Secondary structure
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		912	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	Q	F	G	N	Q	L	A	K	L	E	P	I	V	S	V	L	Q	S	D	P	E	Q	F	E	Q	L	K	E	D	Y	A	Y	S	Q	Q	M	Q	R	D	A	R	Q	Q	A	F	A	L	T	E	V	V	Q	R	R	A	H	F	S	Y	S	D	S	A	E	M	L	S	G	N	S	D	L	N	E	K	L	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	I	A	G	Y	D	A	L	R	L	H	T	E	S	R	M	L	F	A	D	A	D	S	L	R	I	S	P	R	E	A	R	S	L	I	E	Q	A	E	K	R	Q	K	D	A	Q	N	A	D	K	K	A	A	D	M	L	A	E	Y	E	R	R	K	G	I	L	D	T	R	L	S	E	L	E	K	N	G	G	A
Template Known Secondary structure																							T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		992	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	E	Q	A	E	A	E	R	T	R	A	R	E	A	L	R	G	H	A	A	Q	L	S	Q	Y	N	Q	V	L	A	S	L	K	S	S	Y	D	T	K	K	E	L	L	N	D	L	Q	R	E	L	Q	D	I	G	V	R	A	D	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	A	V	L	D	A	Q	Q	A	R	L	L	G	Q	Q	T	R	N	D	R	A	I	S	E	A	R	N	K	L	S	S	V	T	E	S	L	N	T	A	R	N	A	L	T	R	A	E	Q	Q	L	T	Q	Q	K	N	T	P	D	G	K	T	I	V	S	P	E	K	F	P	G	R	S	S	T	N	D	S	I	V
Template Known Secondary structure																																																									S	S									T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
																								1053	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	E	R	A	R	I	R	R	D	E	L	H	A	Q	L	S	N	N	R	S	R	R	N	Q	L	E	K	A	L	T	F	C	E	A	E	M	D	N	L	T	R	K	L	R	K	L	E	R	D	Y	F	E	M	R	E	Q	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	S	G	D	P	R	F	A	G	T	I	K	I	T	T	S	A	V	I	D	N	R	A	N	L	N	Y	L	L	S	H	S	G	L	D	Y	K	R	N	I	L	N	D	R	N	P	V	V	T	E	D	V	E	G	D	K	K	I	Y	N	A	E	V	A	E	W	D	K	L	R	Q	R	L	L	D	A	R	N	K	I
Template Known Secondary structure				S		T	T	T		S																					T	S									T	S					S			S	S
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		1111	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	A	K	A	G	W	C	A	V	M	R	M	V	K	D	N	G	V	E	R	R	L	H	R	R	E	L	A	Y	L	S	A	D	D	L	R	S	M	S	D	K	A	L	G	A	L	R	L	A	V	A	D	N	E	H	L	R	D	V	L	R	M	S	E	D	P	K	R	P	E	R	K	I	Q	F	F	V	A	V
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	S	A	E	S	A	V	N	S	A	R	N	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	R	T	N	E	Q	K	H	A	N	D	A	L	N	A	L	L	K	E	K	E	N	I	R	N	Q
Template Known Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.																																								.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		1191	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.		.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		Y	Q	H	L	R	E	R	I	R	Q	D	I	I	R	T	D	D	P	V	E	A	I	E	Q	M	E	I	E	L	S	R	L	T	E	E	L	T	S	R	E	Q	K	L	A	I	S	S	R	S	V	A	N	I	I	.	R	K	T	I	Q	R	E	Q	N	R	I	R	M	L	N	Q	G	L	Q	N	V	S	F	G	Q
Query Conservation																																																								.
Alig confidence																																																								.
Template Conservation
Template Sequence		L	S	G	I	N	Q	K	I	A	E	E	K	R	K	Q	D	E	L	K	A	T	K	D	A	I	N	F	T	T	E	F	L	K	S	V	S	E	K	Y	G	A	K	A	E	Q	L	A	R	E	M	A	G	Q	A	K	G	K	K	I	R	N	V	E	E	A	L	K	T	Y	E	K	Y	R	A	D	I	N	K	K	I
Template Known Secondary structure																																										T												T	T	T	T		B														T					T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
		1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	S	V	R	L	N	V	N	V	R	E	T	H	A	M	L	L	D	V	L	S	E	Q	H	E	Q	H	Q	D	L	F	N	S	N	R	L	T	F	S	E	A	L	A	K	L	Y	Q	R	L	N	P	Q	I	D	M	G	Q	R	T	P	Q	T	I	G	E	E	L	L	D	Y	R	N	Y	L	E	M	E	V	E
Query Conservation
Alig confidence																																								.	.	.																								.														.	.
Template Conservation																																								.	.	.																								.														.	.
Template Sequence		N	A	K	D	R	A	A	I	A	A	A	L	E	S	V	K	L	S	D	I	S	S	N	L	N	R	F	S	R	G	L	G	Y	A	G	K	F	T	.	.	.	S	L	A	D	W	I	T	E	F	G	K	A	V	R	T	E	N	W	R	P	L	F	V	.	K	T	E	T	I	I	A	G	N	A	A	T	A	.	.
Template Known Secondary structure			S												T																		T			S		B		.	.	.															S	T	T							.			T	T	T	B	T	T		B				.	.
Template Predicted Secondary structure																																								.	.	.																								.														.	.
Template SS confidence
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.				.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.		570	.	.	.	.	.	.	.	.	.	580	.	.
		1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	R	G	S	D	G	W	L	R	A	E	S	G	A	L	S	T	G	E	A	I	G	T	G	M	S	I	L	V	M	V	V	Q	S	W	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	L	V	A	L	V	F	S	I	L	T	G	S	A	L	G	I	I	G	Y	G	L	L	M	A	V	T	G	A	L	I
Template Known Secondary structure		.	.	.	.	.	.	.										T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.