Job Description P0AEX3 Confidence 99.98% Date Thu Jan 5 11:24:31 GMT 2012 Rank 3 Aligned Residues 403 % Identity 13% Template d1pv7a_ SCOP info MFS general substrate transporter MFS general substrate transporter LacY-like proton/sugar symporter Resolution 3.60

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		T	R	R	R	I	W	A	I	V	G	A	S	S	G	N	L	V	E	W	F	D	F	Y	V	Y	S	F	C	S	L	Y	.	F	A	H	I	F	F	P	S	G	N	T	T	T	Q	L	L	Q	T	A	G	V	F	A	A	G	F	L	M	R	P	I	G	G	W	L	F	G	R	I	A	D	K	H	G	R	K	K	S
Query Conservation																																	.
Alig confidence											.	.	.																				.																					.	.	.	.	.	.
Template Conservation											.	.	.																																									.	.	.	.	.	.
Template Sequence		K	N	T	N	F	W	M	F	G	.	.	.	L	F	F	F	F	Y	F	F	I	M	G	A	Y	F	P	F	F	P	I	W	L	H	D	I	N	H	I	S	K	S	D	T	G	I	I	F	A	A	I	S	.	.	.	.	.	.	L	F	S	L	L	F	Q	P	L	F	G	L	L	S	D	K	L	G	L	R	K	Y
Template Known Secondary structure			S								.	.	.																																									.	.	.	.	.	.						T												T	T		T
Template Predicted Secondary structure											.	.	.																																									.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.				.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.							.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	L	S	V	C	M	M	C	F	G	S	L	V	I	A	C	L	P	G	Y	E	T	I	G	T	W	A	P	A	L	L	L	L	A	R	L	F	Q	G	L	S	V	G	G	E	Y	G	T	S	A	T	Y	M	S	E	V	A	V	E	G	R	K	G	F	Y	A	S	F	Q	Y	V	T	L	I	G	G	Q	L	L
Query Conservation
Alig confidence																																					.	.	.	.
Template Conservation																																					.	.	.	.
Template Sequence		L	L	W	I	I	T	G	M	L	V	M	F	A	P	F	F	I	F	I	F	G	P	L	L	Q	Y	N	I	L	V	G	S	I	V	G	.	.	.	.	G	I	Y	L	G	F	C	F	N	A	G	A	P	A	V	E	A	F	I	E	K	V	S	R	R	S	N	F	E	F	G	R	A	R	M	F	G	C	V	G	W
Template Known Secondary structure												T								T							T	T								T	.	.	.	.	T	T	T	G	G	G	G	G	T	T																	S
Template Predicted Secondary structure																																					.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110					.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	L	V	V	V	V	L	Q	H	T	M	E	D	A	A	L	R	E	W	G	W	R	I	P	F	A	L	G	A	V	L	A	V	V	A	L	W	L	R	R	Q	L	D	E	T	S	Q	Q	E	T	R	A	L	K	E	A	G	S	L	K	G	L	W	R	N	R	R	A	F	I	M	V	L	G	F	T	A	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	G	A	S	I	V	G	I	M	F	T	I	N	N	Q	F	V	F	W	L	G	S	G	C	A	L	I	L	A	V	L	L	F	F	A	K	T	D	A	P	S	S	A	T	V	A	N	A	V	G	A	N	H	S	A	F	S	L	K	L	A	L	E	L	F	R	Q	P	K	L	W	F	L	S	L	Y	V	I	G
Template Known Secondary structure																																				S	S				S		S	S	S		S	S					S														T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	C	F	Y	T	F	T	T	Y	M	Q	K	Y	L	V	N	T	A	G	M	H	A	N	V	A	S	G	I	M	T	A	A	L	F	V	F	M	L	I	Q	P	L	I	G	A	L	S	D	K	I	G	R	R	T	S	M	L	C	F	G	S	L	A	A	I	F	T	V	P	I	L	S	A	L	Q	N	V	S	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	C	T	Y	D	V	F	D	Q	Q	F	A	N	F	F	T	S	F	F	A	T	G	E	Q	G	T	R	V	F	G	Y	V	T	T	M	G	E	L	L	N	A	S	I	M	F	F	A	P	L	I	I	N	R	I	G	G	K	N	A	L	L	L	A	G	T	I	M	S	V	R	I	I	G	S	S	F	A	T	S
Template Known Secondary structure																		T	T	S	S	S																									T	T																														T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	A	A	F	G	L	V	M	C	A	L	L	I	V	S	F	Y	T	S	I	S	G	I	L	K	A	E	M	F	P	A	Q	V	R	A	L	G	V	G	L	S	Y	A	V	A	N	A	I	F	G	G	S	A	E	Y	V	A	L	S	L	K	S	I	G	M	E	T	A	F	F	W	Y	V	T	L	M	A	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	E	V	V	I	L	K	T	L	H	M	F	E	V	P	F	L	L	V	G	C	F	K	Y	I	T	S	Q	F	E	V	R	F	S	A	T	I	Y	L	V	C	F	C	F	F	K	Q	L	A	M	I	F	M	S	V	L	A	G	N	M	Y	E	S	I	G	F	Q	G	A	Y	L	V	L	G	L	V	A	L	G
Template Known Secondary structure																															S		G	G	G										T	T	T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	L	V	S	L	M	L	H	R	K	G	K	G	M	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	T	L	I	S	V	F	T	L	S	G	P	G	P	L	S	L
Template Known Secondary structure										S			S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions