Return to main results Retrieve Phyre Job Id

Job DescriptionP0AEX3
Confidence100.00%DateThu Jan 5 11:24:31 GMT 2012
Rank2Aligned Residues392
% Identity11%Templatec3o7pA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20.........30.........40.........50.........60.........70.........80.........90.......
Predicted Secondary structure 





Query SS confidence 















































































Query Sequence  RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML
Query Conservation 
           
      
          
   
                     
   

 
  
 



 


  
 
Alig confidence 


















....

























......
























Template Conservation 
            

  
 ....       
      
    
 
 
  ......  
  
     
 
 

 


    
Template Sequence  RSYIIPFALLCSLFFLWAV. . . . ANNLNDILLPQFQQAFFQAGLIQSAF. . . . . . YFGYFIIPIPAGILMKKLSYKAGII
Template Known Secondary structure 
TTT....TT

TT......TTS
Template Predicted Secondary structure 

....


......


Template SS confidence 















































































   22.......30.........40 .........50.........60...... ...70.........80.........90.
 
   98.100.........110.........120.........130.........140.........150.........160.........170.......
Predicted Secondary structure 


















Query SS confidence 















































































Query Sequence  LSVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL
Query Conservation         
       
                     
                                          
Alig confidence 




















.....





















































Template Conservation         
       
     .....         
 
             
        
             
     
Template Sequence  TGLFLYALGAALFWPAAEIMN. . . . . YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFASFGAIIAV
Template Known Secondary structure  TTT
.....SS
GGG
Template Predicted Secondary structure 



.....
Template SS confidence 















































































   96...100.........110...... ...120.........130.........140.........150.........160.........170
 
   178.180.........190.. .......200.........210.........220.........230.........
Predicted Secondary structure 










..................
































Query SS confidence 














. . . . . . . . . . . . . . . . . .














































Query Sequence  LVVVVLQHTMEDAAL. . . . . . . . . . . . . . . . . . REWGWRIPFALGAVLAVVALWLRRQLDETSQQETRALKEAGSLKGLW
Query Conservation                 ..................                                               
Alig confidence 














..................














































Template Conservation       
                                                                          
Template Sequence  VFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSAS
Template Known Secondary structure  TTSSSS



S
TTS




TTT



SSTTS
Template Predicted Secondary structure 















Template SS confidence 















































































   171........180.........190.........200.........210.........220.........230.........240.........250
 
   240.........250.........260.........270.........280.........290.........300.........310.........
Predicted Secondary structure 





















































Query SS confidence 















































































Query Sequence  RNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLA
Query Conservation                                                                                  
Alig confidence 















































































Template Conservation                                                                                  
Template Sequence  LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAA
Template Known Secondary structure 
STT

S
Template Predicted Secondary structure 






































Template SS confidence 















































































   251........260.........270.........280.........290.........300.........310.........320.........330
 
   320.........330.........340.........350.........360.........370.........380.........390.........
Predicted Secondary structure 

















Query SS confidence 















































































Query Sequence  AIFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANAIFGGSAEYVALSLKSI
Query Conservation                                             
  
   
    
         
    
     
   
Alig confidence 




























































...















Template Conservation                                                               ... 
  
 
 
 
 
   
Template Sequence  YALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTI. . . IGGGIVTPVMGFVSDA
Template Known Secondary structure  S
TTSS
GGGGG...G
Template Predicted Secondary structure 



...
Template SS confidence 















































































   331........340.........350.........360.........370.........380.........390. ........400.......
 
   400.........410.........420.......
Predicted Secondary structure 





Query SS confidence 



























Query Sequence  GMETAFFWYVTLMAVVAFLVSLMLHRKG
Query Conservation                 
          

Alig confidence 



























Template Conservation   
                     
  

Template Sequence  AGNIPTAELIPALCFAVIFIFARFRSQT
Template Known Secondary structure  TSSGGGGTS



Template Predicted Secondary structure 




Template SS confidence 



























   408.410.........420.........430.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions