Job Description P0AEX3 Confidence 99.97% Date Thu Jan 5 11:24:31 GMT 2012 Rank 4 Aligned Residues 368 % Identity 13% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	G	A	S	S	G	N	L	V	E	W	F	D	F	Y	V	Y	S	F	C	S	L	Y	F	A	H	I	F	F	P	S	G	N	T	T	T	Q	L	L	Q	T	A	G	V	F	A	A	G	F	L	M	R	P	I	G	G	W	L	F	G	R	I	A	D	K	H	G	R	K	K	S	M	L	L	S	V	C	M	M
Query Conservation
Alig confidence																																													.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.
Template Sequence		L	L	M	L	V	L	L	V	A	V	G	Q	M	A	Q	T	I	Y	I	P	A	I	A	D	M	A	R	D	L	N	V	R	E	G	A	V	Q	S	V	M	G	A	Y	.	.	.	.	.	.	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	G	R	R	P	V	I	L	V	G	M	S	I	F
Template Known Secondary structure																												T	T	S	S	S	T	T											.	.	.	.	.	.									T	T						T	T	S
Template Predicted Secondary structure																																													.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.							.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	F	G	S	L	V	I	A	C	L	P	G	Y	E	T	I	G	T	W	A	P	A	L	L	L	L	A	R	L	F	Q	G	L	S	V	G	G	E	Y	G	T	S	A	T	Y	M	S	E	V	A	V	E	G	R	K	G	F	Y	A	S	F	Q	Y	V	T	L	I	G	G	Q	L	L	A	L	L	V	V	V	V	L
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.
Template Sequence		M	L	A	T	L	V	A	V	T	T	S	S	L	T	V	.	.	.	.	.	.	.	.	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L	L
Template Known Secondary structure																	.	.	.	.	.	.	.	.																													T	S	S			S																							S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.									.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	H	T	M	E	D	A	A	L	R	E	W	G	W	R	I	P	F	A	L	G	A	V	L	A	V	V	A	L	W	L	R	R	Q	L	D	E	T	S	Q	Q	E	T	R	A	L	K	E	A	G	S	L	K	G	L	W	R	N	R	R	A	F	I	M	V	L	G	F	T	A	A	G	S	L	C	F	Y	T	F	T
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.
Template Sequence		D	T	M	W	N	W	R	A	C	Y	L	F	L	.	.	.	.	.	.	.	.	L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N	C	Y	L	L	M	L	I	G	G	L	A	G	I	A	A	F	E
Template Known Secondary structure		S													.	.	.	.	.	.	.	.														S	S				S	T	T	T						T	T	T		S	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.									.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	M	Q	K	Y	L	V	N	T	A	G	M	H	A	N	V	A	S	G	I	M	T	A	A	L	F	V	F	M	L	I	Q	P	L	I	G	A	L	S	D	K	I	G	R	R	T	S	M	L	C	F	G	S	L	A	A	I	F	T	V	P	I	L	S	A	L	Q	N	V	S	S	P	Y	A	A	F	G	L	V
Query Conservation
Alig confidence																																																																							.
Template Conservation																																																																							.
Template Sequence		A	C	S	G	V	L	M	G	A	V	L	G	L	S	S	M	T	V	S	I	L	F	I	L	P	I	P	A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	C	C	L	L	A	G	L	L	M	W	I	P	D	W	F	G	V	.	M	N	V	W	T	L	L	V	P	A
Template Known Secondary structure					S		S	S																	T														T	T	T	T																T	S	S	S	S	S								.
Template Predicted Secondary structure																																																																							.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	C	A	L	L	I	V	S	F	Y	T	S	I	S	G	I	L	K	A	E	M	F	P	A	Q	V	R	A	L	G	V	G	L	S	Y	A	V	A	N	A	I	F	G	G	S	A	E	Y	V	A	L	S	L	K	S	I	G	M	E	T	A	F	F	W	Y	V	T	L	M	A	V	V	A
Query Conservation
Alig confidence																									.																.
Template Conservation																									.																.
Template Sequence		A	L	F	F	F	G	A	G	M	L	F	P	L	A	T	S	G	A	M	E	P	F	P	.	F	L	A	G	T	A	G	A	L	V	G	G	L	Q	N	.	I	G	S	G	V	L	A	S	L	S	A	M	L	P	Q	T	G	Q	G	S	L	G	L	L	M	T	L	M	G	L	L	I	V
Template Known Secondary structure											T	S	S	T	T						T				.																.							S	T	T		T
Template Predicted Secondary structure																									.																.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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