|   |
3 | . | . | . | |
|
|
|
|
|
. | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  | . | . | . | . | . | . |
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | V | R | I | . |
. |
. |
. |
. |
. |
D | A | E | A | R | W | S | D | V | V | I | H | N | N | T | L | Y | Y | T | G | V | P | E | N | L | D | . |
. |
. |
. |
. |
. |
. |
A | D | A | F | E | Q | T | A | N | T | L | A | Q | I | D | A | V | L | E | K | Q | G | S | N | K | S | S | I | L | D | A | T | I | F | L | A | D |
Query Conservation |   |
|   |
|   | . | . | . | . | . | . |   |   |   |   |   |
|
|   |
|
|   |   |
|   |   |
|   |
|
|
|   |   |   |   |   |   | . | . | . | . | . | . | . |   |
|   |   |   |
|   |   |   |   |
|   |
|
|   |   |   |
|   |   |
|
|   |   |   |   |   |
|
|
|   |   |
|
|   |   |   |
Alig confidence |   |
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |   |   |
|   |
|   |
|   |
|
|   |
|
|   |   |
|   |   |
|   |
|
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |
|
|   |   |   |   |
|
|   |   |
Template Sequence |   |
M | E | T | V | F | T | E | K | A | P | K | P | V | G | P | Y | S | Q | A | I | K | V | G | N | T | L | Y | V | S | G | Q | I | P | I | D | P | R | T | N | E | I | V | K | G | D | I | K | V | Q | T | R | Q | V | L | D | N | I | K | E | I | V | K | A | A | G | F | S | L | S | D | V | A | M | A | F | V | F | L | K | D |
Template Known Secondary structure |   |
|  |  |  |
|
| T | T | S |
|
|
|
| S | S |
|
| S |  |  |  |  | T | T |  |  |  |  |  |  |  |
| S |  |  | T | T | T | T |  |  |
| S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| G | G | G |  |  |  |  |  |  |  |  | S |
|
Template Predicted Secondary structure |   |
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
  |   |
70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | N | D | F | A | A | M | N | K | A | W | D | A | W | V | V | A | G | H | A | P | V | R | C | T | V | Q | A | G | L | M | N | P | K | Y | K | V | E | I | K | I | V | A | A |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|   |   |   |
|   |   |   |
|   |   |   |   |   |
|
|
|
|
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |
| . |   |   |   |   |
|
|   |
|   |
|   |
|   |   |
|   |   |   |   |   |
|
|
|
|   |
|
|   |
Template Sequence |   |
M | N | M | F | N | D | F | N | S | V | Y | A | E | Y | F | . |
K | D | K | P | P | A | R | V | T | V | E | V | S | R | L | P | K | D | A | L | I | E | I | A | V | I | C | S |
Template Known Secondary structure |   |
G | G | G |  |  |  |  |  |  |  |  |  |  |  |
| . |
| S | S |
|
|  |  |  |  |  |  |
| S |
|
| G | G | G |
| S |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | |
. | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . |
  |