|   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
Query Sequence |   |
L | N | T | L | I | V | G | A | S | G | Y | A | G | A | E | L | V | T | Y | V | N | R | H | P | H | M | N | I | T | A | L | T | V | S | A | Q | S | N | D | A | G | K | L | I | S | D | L | H | P | Q | L | K | G | I | V | D | L | P | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Q | P | M | S |
Query Conservation |   |
|
|
|
|
|
|
|
|
|
|   |
|
|   |   |
|
|
|
|
|   |   |
|
|   |   |   |
|   |   |
|   |   |   |
|
|   |   |   |
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
| . |
|
|
|
|
|
|   |
|   |
|
|   |   |   |   | . |   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |
|
|
|
|   |
|
|
|
|
|
|   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|
|
|
|   |
|   |
|   |   |   |   |
|
|   |
Template Sequence |   |
M | K | V | G | I | N | G | . |
F | G | R | I | G | R | Q | V | F | R | I | L | H | S | R | . |
G | V | E | V | A | L | I | N | D | L | T | D | N | K | T | L | A | H | L | L | K | Y | D | S | I | Y | H | R | F | P | G | E | V | A | Y | D | D | Q | Y | L | Y | V | D | G | K | A | I | R | A | T | A | V | K | D | P | K |
Template Known Secondary structure |   |
|  |  |  |  |  |
| . |
| S |  |  |  |  |  |  |  |  |  |  |  |  |  | . | T |
|
|  |  |  |  |  |
| S | S |
|  |  |  |  |  |  |  |  |  |
|
| T | T | T |
| S |
| S | S |
|  |  |  |
| S | S |  |  |  |  | T | T |  |  |  |  |  |  |
|
| S | S | G | G |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | |
. | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | |
. | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . |
  |
  |   |
65 | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|  |  |  |  | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
Query Sequence |   |
D | I | S | E | F | S | P | G | V | D | V | V | F | L | A | T | A | H | E | V | S | H | D | L | A | P | Q | F | L | E | A | G | C | V | V | F | D | L | S | G | A | F | R | V | N | D | A | T | F | Y | E | K | Y | Y | G | F | T | H | Q | Y | P | E | L | L | E | Q | A | A | Y | G | L | A | E | W | C | G | N | K | L | . |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |
|
|
|
|   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|
|
|   |   |   |   |   |
| . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
| . | . | . |
|
|
|
|
| . |
Template Conservation |   |
  |
|
|
|   |   |   |
|
|
|   |
|
|
|   |
|
|   |
|   |   |   |   |   |
|   |   |
|
|   |   |
|
|
|
|
|
|
|
|
|
|   |   |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|   |
|   |
|
| . | . | . |
|   |   |   |
|   |
Template Sequence |   |
E | I | P | W | A | E | A | G | V | G | V | V | I | E | S | T | G | V | F | T | D | A | D | K | A | K | A | H | L | E | G | G | A | K | K | V | I | I | T | A | P | A | K | G | E | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | T | I | V | M | G | V | . |
. |
. |
N | H | E | A | Y | D |
Template Known Secondary structure |   |
G |
|
| T | G | G | G | T |  |  |  |  |  |  |
| S | S | S |
|
| B |  |  |  |  | T |  |  |  |  | T | T |
| S |  |  |  |  | S | S |
|
| B | S |
| S | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |
|
| T | T | T | . | . | . | T | G | G | G |
|
|
Template Predicted Secondary structure |   |
 |
|
|  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  | . | . | . |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
79 | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 130 | . | |
|
|
. | . | . | . | . | . |
  |
  |   |
|
144 | . | . | . | . | . | 150 | . | . | . | . | . | |
|
|
. | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 |
Predicted Secondary structure |   |
. |
|
|
|
|  |  |  |
|
|
|
|
| . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
K | E | A | N | L | I | A | V | P | G | C | Y | . |
. |
. |
P | T | A | A | Q | L | A | L | K | P | L | I | D | A | D |
Query Conservation |   |
. |   |   |   |   |
|
|
|
|
|   |
|   | . | . | . |
|
|   |   |   |
|   |
|   |
|
|   |   |   |   |
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|
|
|
|
|
|
|   |   |   |
|
|
|
|
|
|
|   |
|
|
|   |
|
|   |
Template Sequence |   |
P | S | R | H | H | I | I | S | N | A | S | N | E | W | G | Y | A | N | R | V | A | D | L | V | E | L | V | L | R | K | G |
Template Known Secondary structure |   |
T | T | T |
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
138 | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . |
  |