 |
Job Description | P11446 | Confidence | 96.55% | Date | Thu Jan 5 11:32:37 GMT 2012 |
Rank | 383 | Aligned Residues | 94 |
% Identity | 14% | Template | d1j4aa1 |
SCOP info | NAD(P)-binding Rossmann-fold domains
| NAD(P)-binding Rossmann-fold domains
| Formate/glycerate dehydrogenases, NAD-domain
|
Resolution | 1.90 |
|
 |
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
| . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
Query Sequence |   |
N | T | L | I | V | G | A | S | G | Y | A | G | A | E | L | V | T | Y | V | N | R | H | P | H | M | N | I | T | A | L | T | V | S | A | Q | S | N | D | A | G | K | L | I | S | D | L | H | P | Q | L | K | G | I | V | D | L | P | L | Q | P | M | S | D | I | S | E | F | S | P | G | V | D | V | V | F | L | A | T | A | . |
Query Conservation |   |
|
|
|
|
|
|
|
|
|   |
|
|   |   |
|
|
|
|
|   |   |
|
|   |   |   |
|   |   |
|   |   |   |
|
|   |   |   |
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|   |   | . |
Alig confidence |   |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
Template Conservation |   |
  |
|
|
|
|
| . |   |
|   |
|
|   |   |
|
|   |   |
|   |   |   | . |
|   |   |
|   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |   |   |
|
|
|   |   |   |   |
|
|
Template Sequence |   |
V | V | G | V | V | G | . |
T | G | H | I | G | Q | V | F | M | Q | I | M | E | G | F | . |
G | A | K | V | I | T | Y | D | I | F | R | N | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
E | L | E | K | K | G | Y | Y | V | D | S | L | D | D | L | Y | K | Q | A | D | V | I | S | L | H | V | P | D |
Template Known Secondary structure |   |
 |  |  |  |  |
| . |
| S |  |  |  |  |  |  |  |  |  |  |  |  | T | . | T |
|  |  |  |  |  |
| S | S |
|
|  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  | T | T |
| B |
| S |
|  |  |  |  |  |  |  |
| S |  |  |  |  |
| S |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |
| . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
148 | . | 150 | . | . | . | |
. | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | |
. | 170 | . | . | . | . | . | . | . | . | . | 180 | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . |
  |
  |   |
|
|
|
|
|
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
H | E | V | S | H | D | L | A | P | Q | F | L | E | A | G | C | V | V | F | D | L | S | G | A | F | R | V | N | D | A | T | F | Y | E |
Query Conservation |   |
. | . | . | . | . |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|   |
|   |   |
|
|   |   |
|   |   |   |   |   |
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |
|
|   |   |   |   |
|   |   | . |
|
|   |   |
|   |
|
|
|   |
|
|
|   |
|
|
|   |   |
|
|   |   |
Template Sequence |   |
V | P | A | N | V | H | M | I | N | D | E | S | I | A | K | . |
M | K | Q | D | V | V | I | V | N | V | S | R | G | P | L | V | D | T | D | A | V | I | R |
Template Known Secondary structure |   |
| G | G | G | T | T |
| B | S |  |  |  |  |  |  | . | S |
| T | T |  |  |  |  |  |
| S |
| G | G | G | B |
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |
|
|
|
|  |  |  |  |  |  | . |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | |
. | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|