Job Description P11446 Confidence 100.00% Date Thu Jan 5 11:32:37 GMT 2012 Rank 41 Aligned Residues 299 % Identity 14% Template c3hjaB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase from borrelia burgdorferi Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.																		.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	T	L	I	V	G	A	S	G	Y	A	G	A	E	L	V	T	Y	V	N	R	H	P	H	M	N	I	T	A	L	T	V	S	A	Q	S	N	D	A	G	K	L	I	S	D	L	H	P	Q	L	K	G	I	V	D	L	P	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	M	S
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.																.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.																.
Template Sequence		M	K	L	A	I	N	G	.	F	G	R	I	G	R	N	V	F	K	I	A	F	E	R	.	G	I	D	I	V	A	I	N	D	L	T	D	P	K	T	L	A	H	L	L	K	Y	D	S	T	F	G	V	Y	N	K	K	V	E	S	R	D	G	A	I	V	V	D	G	R	E	I	K	I	I	A	E	R	D	P	K
Template Known Secondary structure									.		S													T	.	T									S	S													T	T	T				S	S						T	T					T	T									S	S	G	G
Template Predicted Secondary structure									.																.
Template SS confidence
		1	.	.	.	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80						.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.
Query SS confidence																		.	.	.	.	.
Query Sequence		D	I	S	E	F	S	P	G	V	D	V	V	F	L	A	T	.	.	.	.	.	A	H	E	V	S	H	D	L	A	P	Q	F	L	E	A	G	C	V	V	F	D	L	S	G	A	F	R	V	N	D	A	T	F	Y	E	K	Y	Y	G	F	T	H	Q	Y	P	E	L	L	E	Q	A	A	Y	G	L	A	E	W	C
Query Conservation																		.	.	.	.	.
Alig confidence																		.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	L	P	W	A	K	L	G	I	D	V	V	I	E	S	T	G	V	F	S	S	A	T	S	D	K	G	G	Y	L	D	H	V	N	H	A	G	A	K	K	V	I	L	T	V	P	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	I	K	T	I	V	L	G	V	N
Template Known Secondary structure		G			T	T	T	T	T		S						S	S	S			S	S			T	T			G	G	G	G	T	T	T	S			S					S	S			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							T	T	T	S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.																						.	.	.	130	.	.	.	.	.	.	.
		140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure						.																																													.	.	.
Query SS confidence						.																																													.	.	.
Query Sequence		G	N	K	L	.	K	E	A	N	L	I	A	V	P	G	C	Y	P	T	A	A	Q	L	A	L	K	P	L	I	D	A	D	L	L	D	L	N	Q	W	P	V	I	N	A	T	S	G	V	S	.	.	.	G	A	G	R	K	A	A	I	S	N	S	F	C	E	V	S	L	Q	P	Y	G	V	F	T	H	R	H	Q
Query Conservation						.																																													.	.	.
Alig confidence						.																																													.	.	.
Template Conservation
Template Sequence		D	H	D	I	N	S	D	L	K	A	V	S	N	A	S	C	T	T	N	C	L	A	P	L	A	K	V	L	H	E	S	F	G	I	E	Q	G	L	M	T	T	V	H	A	Y	T	N	D	Q	R	I	L	D	L	P	H	S	D	L	R	R	A	R	A	A	A	L	S	I	I	P	T	S	T	G	A	A	K	A	V
Template Known Secondary structure		G	G	G			T	T																																								T	T	S	B	S	S	S				S	S	T	T	T	T	S	B	T	T	T	S								T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.				.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																		.																						.	.	.
Query SS confidence																																		.																						.	.	.
Query Sequence		P	E	I	A	T	H	L	G	A	D	V	I	F	T	P	H	L	G	N	F	P	R	G	I	L	E	T	I	T	C	R	L	.	K	S	G	V	T	Q	A	Q	V	A	Q	V	L	Q	Q	A	Y	A	H	K	P	.	.	.	L	V	R	L	Y	D	K	G	V	P	A	L	K	N	V	V	G	L	P	F	C	D	I
Query Conservation																																		.																						.	.	.
Alig confidence																																		.																						.	.	.												.
Template Conservation																																																																						.
Template Sequence		G	L	V	L	P	E	L	K	G	K	L	N	G	T	S	M	R	V	P	V	P	T	G	S	I	V	D	L	T	V	Q	L	K	K	K	D	V	T	K	E	E	I	N	S	V	L	R	K	A	S	E	T	P	E	L	K	G	I	L	G	Y	T	E	D	P	I	V	S	.	S	D	I	K	G	N	S	H	S	S	I
Template Known Secondary structure						G	G	G	T	T	T									S		S	S											S		T	T														T	T	S	T	T	T	T	T	T						S				G	.	G	G	G	T	T				S
Template Predicted Secondary structure																																																																						.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.
							292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	G	F	A	V	Q	G	E	H	L	I	I	V	A	T	E	D	N	L	L	K	G	A	A	A	Q	A	V	Q	C	A	N	I	R	F
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																				.
Template Conservation																										.
Template Sequence		V	D	G	L	E	T	M	V	L	E	N	G	F	A	K	I	L	S	W	Y	D	N	E	F	.	G	Y	S	T	R	V	V	D	L	A	Q	K	L	V
Template Known Secondary structure				G	G	G					S	T	T										T	T		.
Template Predicted Secondary structure																										.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions