Phyre 2 alignment of P11446 with c2yyyB

Job Description P11446
Confidence 100.00% Date Thu Jan 5 11:32:37 GMT 2012

Rank 32 Aligned Residues 301

% Identity 11% Template c2yyyB_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase

Resolution 1.85 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.										.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.
Query Sequence	L	N	T	L	I	V	G	A	S	G	Y	A	G	A	E	L	V	T	Y	V	N	R	H	P	H	M	N	I	T	A	L	T	V	S	A	Q	S	N	D	A	G	K	L	I	S	D	L	H	P	Q	L	.	.	.	.	.	.	.	.	.	K	G	I	V	D	L	P	L	Q	P	M	S	D	I	S	E	F	S	P	G
Query Conservation																																																				.	.	.	.	.	.	.	.	.
Alig confidence								.																																												.	.	.	.	.	.	.	.	.
Template Conservation								.
Template Sequence	A	K	V	L	I	N	G	.	Y	G	S	I	G	K	R	V	A	D	A	V	S	M	Q	D	D	M	E	V	I	G	V	T	K	T	K	P	D	F	E	A	R	L	A	V	E	K	G	Y	K	L	F	V	A	I	P	D	N	E	R	V	K	L	F	E	D	A	G	I	P	V	E	G	T	I	L	D	I	I	E	D
Template Known Secondary structure								.		S													S	S	S									S	S		S									T	T						S	S													T						B	G	G	G	T	G	G	G
Template Predicted Secondary structure								.
Template SS confidence
	3	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

	73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	D	V	V	F	L	A	T	A	H	E	V	S	H	D	L	A	P	Q	F	L	E	A	G	C	V	V	F	D	L	S	G	A	F	R	V	N	D	A	T	F	Y	E	K	Y	Y	G	F	T	H	Q	Y	P	E	L	L	E	Q	A	A	Y	G	L	A	E	W	C	G	N	K	L	K	E	A	N	L	I	A	V	P
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Sequence	A	D	I	V	V	D	G	A	P	K	K	I	G	K	Q	N	L	E	N	I	Y	K	P	H	K	V	K	A	I	L	Q	G	G	E	K	A	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	D	N	F	N	.	A	L	W	S	Y	N	R	C	Y	G	K	D	Y	V	R	V	V
Template Known Secondary structure		S								T	T									T	T	T	T	T	T							T	T	S		G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S					.	T	T	T	T	T	T	T	T	T	T		S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template SS confidence
	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.																			120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.

	153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	C	Y	P	T	A	A	Q	L	A	L	K	P	L	I	D	A	D	L	L	D	L	N	Q	W	P	V	I	N	A	T	S	G	V	S	G	A	G	R	K	A	A	I	S	N	S	F	C	E	V	S	L	Q	P	Y	G	V	F	T	H	R	H	Q	P	E	I	A	T	H	L	G	A	D	V	I	F	T	P	H	L
Query Conservation
Alig confidence																															.	.	.
Template Conservation																															.	.	.
Template Sequence	S	C	N	T	T	G	L	C	R	I	L	Y	A	I	N	S	I	A	D	I	K	K	A	R	I	V	L	V	R	R	.	.	.	A	A	D	P	N	D	D	K	T	G	P	V	N	A	I	T	P	N	P	V	T	V	P	S	H	H	G	P	D	V	V	S	V	V	P	E	F	E	G	K	I	L	T	S	A	V	I
Template Known Secondary structure																T	T	S													.	.	.	S	S		T	T		S	S				S	S					S	S	S	S	S	S		T										G	G	G	T	T	S
Template Predicted Secondary structure																															.	.	.
Template SS confidence
	143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.				.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

	233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.												.	.	.	.	.	.	290	.				.	.	.	.	.
Predicted Secondary structure																																											.	.										.	.	.	.	.	.	.	.	.	.	.									.	.	.
Query SS confidence																																											.	.										.	.	.	.	.	.	.	.	.	.	.									.	.	.
Query Sequence	G	N	F	P	R	G	I	L	E	T	I	T	C	R	L	K	S	G	V	T	Q	A	Q	V	A	Q	V	L	Q	Q	A	Y	A	H	K	P	L	V	R	L	Y	D	.	.	K	G	V	P	A	L	K	N	V	.	.	.	.	.	.	.	.	.	.	.	V	G	L	P	F	C	D	I	.	.	.	G	F	A	V	Q
Query Conservation																																											.	.										.	.	.	.	.	.	.	.	.	.	.									.	.	.
Alig confidence																																.	.	.	.								.	.										.	.	.	.	.	.	.	.	.	.	.									.	.	.
Template Conservation																																.	.	.	.
Template Sequence	V	P	T	T	L	M	H	M	H	T	L	M	V	E	V	D	G	D	V	S	R	D	D	I	L	E	A	I	K	K	T	.	.	.	.	P	R	I	I	T	V	R	A	E	D	G	F	S	S	T	A	K	I	I	E	Y	G	R	D	L	G	R	L	R	Y	D	I	N	E	L	V	V	W	E	E	S	I	N	V	L
Template Known Secondary structure		S			S												S														S	.	.	.	.	T	T						G	G	G	T			S												T		G	G	G				S					G	G	G
Template Predicted Secondary structure																																.	.	.	.
Template SS confidence
	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250					.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

	297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence	G	E	H	L	I	I	V	A	T	E	D	N	L	L	K	G	A	A	A	Q	A	V	Q	C	A	N	I	R	F	G	Y	A	E	T
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence	E	N	E	I	F	L	M	Q	A	V	H	Q	E	S	.	I	V	I	P	E	N	I	D	C	I	R	A	M	L	Q	M	E	E	D
Template Known Secondary structure	T	T										T	T	T	.	T	T												T	T			S
Template Predicted Secondary structure															.
Template SS confidence
	296	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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