Job Description P11446 Confidence 100.00% Date Thu Jan 5 11:32:37 GMT 2012 Rank 17 Aligned Residues 306 % Identity 15% Template c2gd1P_ PDB info PDB header:oxidoreductase(aldehyde(d)-nad(a)) Chain: P: PDB Molecule:apo-d-glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: coenzyme-induced conformational changes in glyceraldehyde-3-2 phosphate dehydrogenase from bacillus stearothermophillus Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.																		.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	T	L	I	V	G	A	S	G	Y	A	G	A	E	L	V	T	Y	V	N	R	H	P	H	M	N	I	T	A	L	T	V	S	A	Q	S	N	D	A	G	K	L	I	S	D	L	H	P	Q	L	K	G	I	V	D	L	P	L	Q	P	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.
Template Sequence		V	K	V	G	I	N	G	.	F	G	R	I	G	R	N	V	F	R	A	A	L	K	N	P	D	I	E	V	V	A	V	N	D	L	T	D	A	N	T	L	A	H	L	L	K	Y	D	S	V	H	G	R	L	D	A	E	V	S	V	N	G	N	N	L	V	V	N	G	K	E	I	I	V	K	A	E	R	D	P	E
Template Known Secondary structure									.		S											T	T		T	T									S	S													T	T	T				S	S						T	T					T	T									S		G	G
Template Predicted Secondary structure									.
Template SS confidence
		1	.	.	.	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	S	E	F	S	P	G	V	D	V	V	F	L	A	T	A	H	E	V	S	H	D	L	A	P	Q	F	L	E	A	G	C	V	V	F	D	L	S	G	A	F	R	V	N	D	A	T	F	Y	E	K	Y	Y	G	F	T	H	Q	Y	P	E	L	L	E	Q	A	A	Y	G	L	A	E	W	C	G	N	K	L	K
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Sequence		N	L	A	W	G	E	I	G	V	D	I	V	V	E	S	T	G	R	F	T	K	R	E	D	A	A	K	H	L	E	A	G	A	K	K	V	I	I	S	A	P	A	K	N	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	I	V	M	G	V	N	Q	.	D	K	Y	D	P	K
Template Known Secondary structure		G							T								S	S	S			B					T					T	T		S					S	S			B	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	T	S	G	.	G	G			T	T
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.																			.	.	.	130	.	.	.	.	.		.	.	.	.	140	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																																									.	.	.
Query SS confidence																																																									.	.	.
Query Sequence		E	A	N	L	I	A	V	P	G	C	Y	P	T	A	A	Q	L	A	L	K	P	L	I	D	A	D	L	L	D	L	N	Q	W	P	V	I	N	A	T	S	G	V	S	G	A	G	R	K	A	A	I	S	N	S	F	.	.	.	C	E	V	S	L	Q	P	Y	G	V	F	T	H	R	H	Q	P	E	I	A	T	H
Query Conservation																																																									.	.	.
Alig confidence																																																									.	.	.
Template Conservation
Template Sequence		A	H	H	V	I	S	N	A	S	C	T	T	N	C	L	A	P	F	A	K	V	L	H	E	Q	F	G	I	V	R	G	M	M	T	T	V	H	S	Y	T	N	D	Q	R	I	L	D	L	P	H	K	D	L	R	R	A	R	A	A	A	E	S	I	I	P	T	T	T	G	A	A	K	A	V	A	L	V	L	P	E
Template Known Secondary structure		T																																								T	T	S	B	S	S	S				S	S	S	S	T	T	S	B	T	T	T	S							S	T	T	G	G	G	T	T	T	S	G	G
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.						.	.	.
Predicted Secondary structure																																																	.	.																								.	.	.	.	.
Query SS confidence																																																	.	.																								.	.	.	.	.
Query Sequence		L	G	A	D	V	I	F	T	P	H	L	G	N	F	P	R	G	I	L	E	T	I	T	C	R	L	K	S	G	V	T	Q	A	Q	V	A	Q	V	L	Q	Q	A	Y	A	H	K	P	.	.	L	V	R	L	Y	D	K	G	V	P	A	L	K	N	V	V	G	L	P	F	C	D	I	.	.	.	.	.	G	F	A
Query Conservation																																																	.	.																								.	.	.	.	.
Alig confidence																																																	.	.									.															.	.	.	.	.
Template Conservation																																																											.
Template Sequence		L	K	G	K	L	N	G	M	A	M	R	V	P	T	P	N	V	S	V	V	D	L	V	A	E	L	E	K	E	V	T	V	E	E	V	N	A	A	L	K	A	A	A	E	G	E	L	K	G	I	L	A	Y	S	E	E	P	.	L	V	S	R	D	Y	N	G	S	T	V	S	S	T	I	D	A	L	S	T	M	V
Template Known Secondary structure		G	T	T	T									S		S	S											S	S																	T	T	T	B	T	T						S		.			G	G	G	G	T	T			S	S					G	G	G
Template Predicted Secondary structure																																																											.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	G	E	H	L	I	I	V	A	T	E	D	N	L	L	K	G	A	A	A	Q	A	V	Q	C	A	N	I	R	F	G	Y	A	E	T	Q	S	L
Query Conservation
Alig confidence																.																	.	.	.	.
Template Conservation																.																	.	.	.	.
Template Sequence		I	D	G	K	M	V	K	V	V	S	W	Y	D	N	.	E	T	G	Y	S	H	R	V	V	D	L	A	A	Y	I	A	.	.	.	.	S	K	G	L
Template Known Secondary structure			T	T	T										T	.	T																.	.	.	.
Template Predicted Secondary structure																.																	.	.	.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.					330	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions