Job Description P11446 Confidence 100.00% Date Thu Jan 5 11:32:37 GMT 2012 Rank 38 Aligned Residues 299 % Identity 18% Template c2ep7B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: structural study of project id aq_1065 from aquifex aeolicus vf5 Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.																		.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	T	L	I	V	G	A	S	G	Y	A	G	A	E	L	V	T	Y	V	N	R	H	P	H	M	N	I	T	A	L	T	V	S	A	Q	S	N	D	A	G	K	L	I	S	D	L	H	P	Q	L	K	G	I	V	D	L	P	L	Q	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	S
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.
Template Sequence		I	K	V	G	I	N	G	.	F	G	R	I	G	R	S	F	F	R	A	S	W	G	R	E	E	I	E	I	V	A	I	N	D	L	T	D	A	K	H	L	A	H	L	L	K	Y	D	S	V	H	G	I	F	K	G	S	V	E	A	K	D	D	S	I	V	V	D	G	K	E	I	K	V	F	A	Q	K	D	P	S
Template Known Secondary structure									.		S										T	T	T		T	T									S	S													T	T	T				S	S						S	S					T	T									S	S	G	G
Template Predicted Secondary structure									.
Template SS confidence
		3	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	S	E	F	S	P	G	V	D	V	V	F	L	A	T	A	H	E	V	S	H	D	L	A	P	Q	F	L	E	A	G	C	V	V	F	D	L	S	G	A	F	R	V	N	D	A	T	F	Y	E	K	Y	Y	G	F	T	H	Q	Y	P	E	L	L	E	Q	A	A	Y	G	L	A	E	W	C	G	N	K	L	K
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.
Template Sequence		Q	I	P	W	G	D	L	G	V	D	V	V	I	E	A	T	G	V	F	R	D	R	E	N	A	S	K	H	L	Q	G	G	A	K	K	V	I	I	T	A	P	A	K	N	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	V	V	L	G	V	.	.	.	N	E	E	K	Y	N
Template Known Secondary structure		G							T		S						S	S	S			S					T	T	T	T	T	T	T		S					S	S			S	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	T	.	.	.	T	G	G	G
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.																			.	.	130	.	.	.	.				.	.	.	.	.	140
				145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																												.	.	.
Query SS confidence		.	.																																												.	.	.
Query Sequence		.	.	E	A	N	L	I	A	V	P	G	C	Y	P	T	A	A	Q	L	A	L	K	P	L	I	D	A	D	L	L	D	L	N	Q	W	P	V	I	N	A	T	S	G	V	S	.	.	.	G	A	G	R	K	A	A	I	S	N	S	F	C	E	V	S	L	Q	P	Y	G	V	F	T	H	R	H	Q	P	E	I	A
Query Conservation		.	.																																												.	.	.
Alig confidence		.	.																																												.	.	.
Template Conservation
Template Sequence		P	K	E	H	N	I	I	S	N	A	S	C	T	T	N	C	L	A	P	C	V	K	V	L	N	E	A	F	G	V	E	K	G	Y	M	V	T	V	H	A	Y	T	N	D	Q	R	L	L	D	L	P	H	K	D	F	R	R	A	R	A	A	A	I	N	I	V	P	T	T	T	G	A	A	K	A	I	G	E	V	I
Template Known Secondary structure		T	T	T																																								T	T	S	B	S	S	S				S	S	T	T	T	T	S	B	G	G	G									T	T	T	T	G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.										.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.																.	.	.	.	.	.	.	.	.
Query SS confidence																																.																.	.	.	.	.	.	.	.	.
Query Sequence		T	H	L	G	A	D	V	I	F	T	P	H	L	G	N	F	P	R	G	I	L	E	T	I	T	C	R	L	K	S	.	G	V	T	Q	A	Q	V	A	Q	V	L	Q	Q	A	Y	.	.	.	.	.	.	.	.	.	A	H	K	P	L	V	R	L	Y	D	K	G	V	P	A	L	K	N	V	V	G	L	P	F	C
Query Conservation																																.																.	.	.	.	.	.	.	.	.
Alig confidence																																.																.	.	.	.	.	.	.	.	.																.
Template Conservation																																																																								.
Template Sequence		P	E	L	K	G	K	L	D	G	T	A	R	R	V	P	V	P	D	G	S	L	I	D	L	T	V	V	V	N	K	A	P	S	S	V	E	E	V	N	E	K	F	R	E	A	A	Q	K	Y	R	E	S	G	K	V	Y	L	K	E	I	L	Q	Y	C	E	D	P	I	V	S	.	T	D	I	V	G	N	P	H	S
Template Known Secondary structure		G	G	G	T	T	T									S		S	S											S	S			S																		T	T			G	G	G	T	T	S						S				G	.	G	G	G	T	T				S
Template Predicted Secondary structure																																																																								.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.
		290	.					.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure				.	.	.	.
Query SS confidence				.	.	.	.
Query Sequence		D	I	.	.	.	.	G	F	A	V	Q	G	E	H	L	I	I	V	A	T	E	D	N	L	L	K	G	A	A	A	Q	A	V	Q	C	A	N	I	R
Query Conservation				.	.	.	.
Alig confidence				.	.	.	.																				.
Template Conservation																											.
Template Sequence		A	I	F	D	A	P	L	T	Q	V	I	D	N	L	V	H	I	A	A	W	Y	D	N	E	W	.	G	Y	S	C	R	L	R	D	L	V	I	Y	L
Template Known Secondary structure						G	G	G					T	T										T	T		.
Template Predicted Secondary structure																											.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions