Job Description P11446 Confidence 100.00% Date Thu Jan 5 11:32:37 GMT 2012 Rank 29 Aligned Residues 301 % Identity 15% Template c2d2iO_ PDB info PDB header:oxidoreductase Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase; PDBTitle: crystal structure of nadp-dependent glyceraldehyde-3-2 phosphate dehydrogenase from synechococcus sp. complexed3 with nadp+ Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																											.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	L	N	T	L	I	V	G	A	S	G	Y	A	G	A	E	L	V	T	Y	V	N	R	H	P	.	.	H	M	N	I	T	A	L	T	V	S	A	Q	S	N	D	A	G	K	L	I	S	D	L	H	P	Q	L	K	G	I	V	D	L	P	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																											.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.
Template Sequence		T	I	R	V	A	I	N	G	F	.	G	R	I	G	R	N	F	L	R	C	W	F	G	R	Q	N	T	D	L	E	V	V	A	I	N	N	T	S	D	A	R	T	A	A	H	L	L	E	Y	D	S	V	L	G	R	F	N	A	D	I	S	Y	D	E	N	S	I	T	V	N	G	K	T	M	K	I	V	C	D	R
Template Known Secondary structure											.	S												T		S	S		S									S	S													T	T	T					S						T	T					T	T									S
Template Predicted Secondary structure											.
Template SS confidence
		2	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	M	S	D	I	S	E	F	S	P	G	V	D	V	V	F	L	A	T	A	H	E	V	S	H	D	L	A	P	Q	F	L	E	A	G	C	V	V	F	D	L	S	G	A	F	R	V	N	D	A	T	F	Y	E	K	Y	Y	G	F	T	H	Q	Y	P	E	L	L	E	Q	A	A	Y	G	L	A	E	W	C	G	N
Query Conservation
Alig confidence																																											.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	P	L	N	L	P	W	K	E	W	D	I	D	L	V	I	E	S	T	G	V	F	V	T	A	E	G	A	S	K	H	I	Q	A	G	A	K	K	V	L	I	.	T	A	P	G	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	V	G	T	Y	V	I	G	V	N	D	S
Template Known Secondary structure			G	G	G			T	T	T	T	T								S	S	S			B										T	T		S					.	S	S			B	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S						T	T	T	T	G	G
Template Predicted Secondary structure																																											.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.																				.	.	130	.	.	.	.	.	.	.	.	.	140
		142	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure							.	.																																										.	.	.
Query SS confidence							.	.																																										.	.	.
Query Sequence		K	L	K	E	A	.	.	N	L	I	A	V	P	G	C	Y	P	T	A	A	Q	L	A	L	K	P	L	I	D	A	D	L	L	D	L	N	Q	W	P	V	I	N	A	T	S	G	V	S	.	.	.	G	A	G	R	K	A	A	I	S	N	S	F	C	E	V	S	L	Q	P	Y	G	V	F	T	H	R	H	Q	P
Query Conservation							.	.																																										.	.	.
Alig confidence							.	.																																										.	.	.
Template Conservation
Template Sequence		E	Y	R	H	E	D	F	A	V	I	S	N	A	S	C	T	T	N	C	L	A	P	V	A	K	V	L	H	D	N	F	G	I	I	K	G	T	M	T	T	T	H	S	Y	T	L	D	Q	R	I	L	D	A	S	H	R	D	L	R	R	A	R	A	A	A	V	N	I	V	P	T	T	T	G	A	A	K	A	V	A
Template Known Secondary structure		G			T	T	T		S																																						T	T	S		S	S	S				S	S	T	T	T	T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																																						.	.																								.	.	.
Query SS confidence																																																						.	.																								.	.	.
Query Sequence		E	I	A	T	H	L	G	A	D	V	I	F	T	P	H	L	G	N	F	P	R	G	I	L	E	T	I	T	C	R	L	K	S	G	V	T	Q	A	Q	V	A	Q	V	L	Q	Q	A	Y	A	H	K	P	.	.	L	V	R	L	Y	D	K	G	V	P	A	L	K	N	V	V	G	L	P	F	C	D	I	.	.	.
Query Conservation																																																						.	.																								.	.	.
Alig confidence																																																						.	.												.												.	.	.
Template Conservation																																																																			.
Template Sequence		L	V	I	P	E	L	K	G	K	L	N	G	I	A	L	R	V	P	T	P	N	V	S	V	V	D	L	V	V	Q	V	E	K	P	T	I	T	E	Q	V	N	E	V	L	Q	K	A	S	Q	T	T	M	K	G	I	I	K	Y	S	D	L	P	L	V	S	.	S	D	F	R	G	T	D	E	S	S	I	V	D	S
Template Known Secondary structure				S	G	G	G	T	T	S									S		S	S											S	S																	T	T	T	T	T	T						S				G	.	G	G	G	T	T			S	S					G
Template Predicted Secondary structure																																																																			.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.
				292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	G	F	A	V	Q	G	E	H	L	I	I	V	A	T	E	D	N	L	L	K	G	A	A	A	Q	A	V	Q	C	A	N	I	R
Query Conservation		.	.
Alig confidence		.	.																				.
Template Conservation																							.
Template Sequence		S	L	T	L	V	M	D	G	D	L	V	K	V	I	A	W	Y	D	N	E	W	.	G	Y	S	Q	R	V	V	D	L	A	E	L	A
Template Known Secondary structure		G	G					T	T	T										T	T		.
Template Predicted Secondary structure																							.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions