Job Description P11446 Confidence 100.00% Date Thu Jan 5 11:32:37 GMT 2012 Rank 40 Aligned Residues 291 % Identity 13% Template c2czcD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 pyrococcus horikoshii ot3 Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.								.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.
Query Sequence		L	N	T	L	I	V	G	A	S	G	Y	A	G	A	E	L	V	T	Y	V	N	R	H	P	H	M	N	I	T	A	L	T	V	S	A	Q	S	N	D	A	G	K	L	I	S	D	L	H	P	Q	.	.	.	.	.	.	.	L	K	G	I	V	D	L	P	L	Q	P	M	S	D	I	S	E	F	S	P	G	V	D
Query Conservation																																																				.	.	.	.	.	.	.
Alig confidence									.																																											.	.	.	.	.	.	.
Template Conservation									.
Template Sequence		V	K	V	G	V	N	G	.	Y	G	T	I	G	K	R	V	A	Y	A	V	T	K	Q	D	D	M	E	L	I	G	I	T	K	T	K	P	D	F	E	A	Y	R	A	K	E	L	G	I	P	V	Y	A	A	S	E	E	F	I	P	R	F	E	K	E	G	F	E	V	A	G	T	L	N	D	L	L	E	K	V	D
Template Known Secondary structure									.		S												T		S	S									S	S											T	T						S	S	G	G	G							T	T				S		B						T	T		S
Template Predicted Secondary structure									.
Template SS confidence
		3	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	F	L	A	T	A	H	E	V	S	H	D	L	A	P	Q	F	L	E	A	G	C	V	V	F	D	L	S	G	A	F	R	V	N	D	A	T	F	Y	E	K	Y	Y	G	F	T	H	Q	Y	P	E	L	L	E	Q	A	A	Y	G	L	A	E	W	C	G	N	K	L	K	E	A	N	L	I	A	V	P	G	C
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Sequence		I	I	V	D	A	T	P	G	G	I	G	A	K	N	K	P	L	Y	E	K	A	G	V	K	A	I	F	Q	G	G	E	K	A	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	V	S	F	V	A	Q	A	.	N	Y	E	A	A	L	G	K	N	Y	V	R	V	V	S	C
Template Known Secondary structure								S	T	T												T	T							T	T	S		G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S								.		G	G	G	G	T	T		S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.																				.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	T	A	A	Q	L	A	L	K	P	L	I	D	A	D	L	L	D	L	N	Q	W	P	V	I	N	A	T	S	G	V	S	G	A	G	R	K	A	A	I	S	N	S	F	C	E	V	S	L	Q	P	Y	G	V	F	T	H	R	H	Q	P	E	I	A	T	H	L	G	A	D	V	I	F	T	P	H	L	G	N
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.
Template Sequence		N	T	T	G	L	V	R	T	L	S	A	I	R	E	Y	A	D	Y	V	Y	A	V	M	I	R	R	A	A	D	P	N	D	T	K	R	G	.	.	.	.	.	.	.	.	.	P	I	N	A	I	K	P	T	V	E	V	P	S	H	H	G	P	D	V	Q	T	V	I	P	I	N	I	E	T	M	A	F	V	V	P
Template Known Secondary structure														G	G	G												S	S		T	T			S			.	.	.	.	.	.	.	.	.		S	S							S	S	S		T						T	T	T	S												S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.										.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.												.	.	.	.	.	.	290	.	.	.				.	.	.	.	.
Predicted Secondary structure																																												.	.								.	.	.	.	.	.	.	.	.	.	.											.	.	.
Query SS confidence																																												.	.								.	.	.	.	.	.	.	.	.	.	.											.	.	.
Query Sequence		F	P	R	G	I	L	E	T	I	T	C	R	L	K	S	G	V	T	Q	A	Q	V	A	Q	V	L	Q	Q	A	Y	A	H	K	P	L	V	R	L	Y	D	K	G	.	.	V	P	A	L	K	N	V	.	.	.	.	.	.	.	.	.	.	.	V	G	L	P	F	C	D	I	G	F	.	.	.	A	V	Q	G	E
Query Conservation																																												.	.								.	.	.	.	.	.	.	.	.	.	.											.	.	.
Alig confidence																															.	.	.	.										.	.								.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation																															.	.	.	.
Template Sequence		T	T	L	M	H	V	H	S	V	M	V	E	L	K	K	P	L	T	K	D	D	V	I	D	I	F	E	N	T	.	.	.	.	T	R	V	L	L	F	E	K	E	K	G	F	D	S	T	A	Q	I	I	E	F	A	R	D	L	H	R	E	W	N	N	L	Y	E	I	A	V	W	K	E	S	I	N	I	K	G	N
Template Known Secondary structure				S											S	S													T	S	.	.	.	.	T	T						G	G	G	T			S											T	T		G	G	G				S					G	G	G					T	T
Template Predicted Secondary structure																															.	.	.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.					.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	I	I	V	A	T	E	D	N	L	L	K	G	A	A	A	Q	A	V	Q	C	A	N	I	R	F	G	Y
Query Conservation
Alig confidence														.
Template Conservation														.
Template Sequence		R	L	F	Y	I	Q	A	V	H	Q	E	S	.	D	V	I	P	E	N	I	D	A	I	R	A	M	F	E	L
Template Known Secondary structure											T	T	T	.	T	T												T	T
Template Predicted Secondary structure														.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions