Job Description P11446 Confidence 100.00% Date Thu Jan 5 11:32:37 GMT 2012 Rank 37 Aligned Residues 299 % Identity 15% Template c2b4rQ_ PDB info PDB header:oxidoreductase Chain: Q: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 plasmodium falciparum at 2.25 angstrom resolution reveals intriguing3 extra electron density in the active site Resolution 2.25 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.																		.	.
Predicted Secondary structure																																			.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	T	L	I	V	G	A	S	G	Y	A	G	A	E	L	V	T	Y	V	N	R	H	P	H	M	N	I	T	A	L	T	V	.	S	A	Q	S	N	D	A	G	K	L	I	S	D	L	H	P	Q	L	K	G	I	V	D	L	P	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	M
Query Conservation																																			.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.																										.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.
Template Sequence		T	K	L	G	I	N	G	.	F	G	R	I	G	R	L	V	F	R	A	A	F	G	R	K	D	I	E	V	V	A	I	N	D	P	F	M	D	L	N	H	L	C	Y	L	L	K	Y	D	S	V	H	G	Q	F	P	C	E	V	T	H	A	D	G	F	L	L	I	G	E	K	K	V	S	V	F	A	E	K	D	P
Template Known Secondary structure									.		S														S	S									S	S	S													T	T	T		S		S	S						T	T					T	T									S		T
Template Predicted Secondary structure									.
Template SS confidence
		4	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	I	S	E	F	S	P	G	V	D	V	V	F	L	A	T	A	H	E	V	S	H	D	L	A	P	Q	F	L	E	A	G	C	V	V	F	D	L	S	G	A	F	R	V	N	D	A	T	F	Y	E	K	Y	Y	G	F	T	H	Q	Y	P	E	L	L	E	Q	A	A	Y	G	L	A	E	W	C	G	N	K	L
Query Conservation
Alig confidence																																											.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Q	I	P	W	G	K	C	Q	V	D	V	V	C	E	S	T	G	V	F	L	T	K	E	L	A	S	S	H	L	K	G	G	A	K	K	V	I	M	S	A	.	.	P	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	T	P	I	Y	V	M	G	I	N	H	H	Q	Y
Template Known Secondary structure		T	S	S		T	T	T	T	T		S						S	S	S			S					T					T	T		S					S	S	.	.			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S				B			T	T	T	T	G	G	G
Template Predicted Secondary structure																																											.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.																				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		144	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure						.																																									.	.	.	.					.	.
Query SS confidence						.																																									.	.	.	.					.	.
Query Sequence		K	E	A	N	.	L	I	A	V	P	G	C	Y	P	T	A	A	Q	L	A	L	K	P	L	I	D	A	D	L	L	D	L	N	Q	W	P	V	I	N	A	T	S	G	V	S	.	.	.	.	G	A	G	R	.	.	K	A	A	I	S	N	S	F	C	E	V	S	L	Q	P	Y	G	V	F	T	H	R	H	Q	P
Query Conservation						.																																									.	.	.	.					.	.
Alig confidence						.																																									.	.	.	.					.	.
Template Conservation
Template Sequence		D	T	K	Q	L	I	V	S	N	A	S	C	T	T	N	C	L	A	P	L	A	K	V	I	N	D	R	F	G	I	V	E	G	L	M	T	T	V	H	A	S	T	A	N	Q	L	V	V	D	G	P	S	K	G	G	K	D	W	R	A	G	R	C	A	L	S	N	I	I	P	A	S	T	G	A	A	K	A	V	G
Template Known Secondary structure			T	T																									T															T	T	S		S	S	S				G	G	G			G	G	G	G	S		T	T	T								S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																																					.	.																									.	.	.
Query SS confidence																																																					.	.																									.	.	.
Query Sequence		E	I	A	T	H	L	G	A	D	V	I	F	T	P	H	L	G	N	F	P	R	G	I	L	E	T	I	T	C	R	L	K	S	G	V	T	Q	A	Q	V	A	Q	V	L	Q	Q	A	Y	A	H	K	.	.	P	L	V	R	L	Y	D	K	G	V	P	A	L	K	N	V	V	G	L	P	F	C	D	I	.	.	.
Query Conservation																																																					.	.																									.	.	.
Alig confidence																																																					.	.													.												.	.	.
Template Conservation																																																																			.
Template Sequence		K	V	L	P	E	L	N	G	K	L	T	G	V	A	F	R	V	P	I	G	T	V	S	V	V	D	L	V	C	R	L	Q	K	P	A	K	Y	E	E	V	A	L	E	I	K	K	A	A	E	G	P	L	K	G	I	L	G	Y	T	E	D	E	V	V	S	.	Q	D	F	V	H	D	N	R	S	S	I	F	D	M
Template Known Secondary structure				S	G	G	G	T	T	T									S		S	S											S	S																	T	T	T	B	T	T						S				G	.	G	G	G	T	T				S
Template Predicted Secondary structure																																																																			.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300
				292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	G	F	A	V	Q	G	E	H	L	I	I	V	A	T	E	D	N	L	L	K	G	A	A	A	Q	A	V	Q	C	A	N	I	R
Query Conservation		.	.
Alig confidence		.	.																				.
Template Conservation																							.
Template Sequence		K	A	G	L	A	L	N	D	N	F	F	K	L	V	S	W	Y	D	N	E	W	.	G	Y	S	N	R	V	L	D	L	A	V	H	I
Template Known Secondary structure							S	S	S	S										T	T		.
Template Predicted Secondary structure																							.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions