Job Description P11446 Confidence 100.00% Date Thu Jan 5 11:32:37 GMT 2012 Rank 42 Aligned Residues 296 % Identity 11% Template c1ihxD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase; PDBTitle: crystal structure of two d-glyceraldehyde-3-phosphate2 dehydrogenase complexes: a case of asymmetry Resolution 2.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.																		.	.
Predicted Secondary structure																																		.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	T	L	I	V	G	A	S	G	Y	A	G	A	E	L	V	T	Y	V	N	R	H	P	H	M	N	I	T	A	L	T	V	.	S	A	Q	S	N	D	A	G	K	L	I	S	D	L	H	P	Q	L	K	G	I	V	D	L	P	L	Q	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	S
Query Conservation																																		.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.																.										.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.																.
Template Sequence		K	I	G	I	N	G	.	F	G	R	I	G	R	L	V	L	R	T	A	L	E	M	.	G	A	Q	V	V	A	V	N	D	P	F	I	A	L	E	Y	M	V	Y	M	F	K	Y	D	S	T	H	G	M	F	K	G	E	V	K	V	E	D	G	A	L	V	V	D	G	K	K	I	T	V	F	N	E	M	K	P	E
Template Known Secondary structure								.		S											T	T	T	.	T									T	T	S													T	T	T					S						S	S					T	T									S	S	G	G
Template Predicted Secondary structure								.																.
Template SS confidence
		2	.	.	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	S	E	F	S	P	G	V	D	V	V	F	L	A	T	A	H	E	V	S	H	D	L	A	P	Q	F	L	E	A	G	C	V	V	F	D	L	S	G	A	F	R	V	N	D	A	T	F	Y	E	K	Y	Y	G	F	T	H	Q	Y	P	E	L	L	E	Q	A	A	Y	G	L	A	E	W	C	G	N	K	L	K
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	P	W	S	K	A	G	A	E	Y	I	V	E	S	T	G	V	F	T	T	I	E	K	A	S	A	H	F	K	G	G	A	K	K	V	I	I	S	A	P	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	A	P	M	F	V	C	G	V	N	L	E	K	Y	S
Template Known Secondary structure		G							T								S	S	S			S					G	G	G	G	T	T	T		S					S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S		B			T	T	T	S	G	G	G
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.																							.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		145	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.																																									.	.	.	.
Query SS confidence					.																																									.	.	.	.
Query Sequence		E	A	N	.	L	I	A	V	P	G	C	Y	P	T	A	A	Q	L	A	L	K	P	L	I	D	A	D	L	L	D	L	N	Q	W	P	V	I	N	A	T	S	G	V	S	.	.	.	.	G	A	G	R	K	A	A	I	S	N	S	F	C	E	V	S	L	Q	P	Y	G	V	F	T	H	R	H	Q	P	E	I	A
Query Conservation					.																																									.	.	.	.
Alig confidence					.																																									.	.	.	.
Template Conservation
Template Sequence		K	D	M	K	V	V	S	N	A	S	C	T	T	N	C	L	A	P	V	A	K	V	L	H	E	N	F	E	I	V	E	G	L	M	T	T	V	H	A	V	T	A	T	Q	K	T	V	D	G	P	S	A	K	D	W	R	G	G	R	G	A	A	Q	N	I	I	P	S	S	T	G	A	A	K	A	V	G	K	V	I
Template Known Secondary structure		T	T																																								T	T	S	B	S	S	S				T	T		T	G	G	G	S	B	T	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.						.
Predicted Secondary structure																																																		.	.																									.	.	.	.	.
Query SS confidence																																																		.	.																									.	.	.	.	.
Query Sequence		T	H	L	G	A	D	V	I	F	T	P	H	L	G	N	F	P	R	G	I	L	E	T	I	T	C	R	L	K	S	G	V	T	Q	A	Q	V	A	Q	V	L	Q	Q	A	Y	A	H	K	.	.	P	L	V	R	L	Y	D	K	G	V	P	A	L	K	N	V	V	G	L	P	F	C	D	I	.	.	.	.	.	G
Query Conservation																																																		.	.																									.	.	.	.	.
Alig confidence																																																		.	.													.												.	.	.	.	.
Template Conservation																																																																.
Template Sequence		P	E	L	D	G	K	L	T	G	M	A	F	R	V	P	T	P	N	V	S	V	V	D	L	T	V	R	L	G	K	E	C	S	Y	D	D	I	K	A	A	M	K	T	A	S	E	G	P	L	Q	G	V	L	G	Y	T	E	D	D	V	V	S	.	C	D	F	T	G	D	N	R	S	S	I	F	D	A	K	A	G
Template Known Secondary structure		G	G	G	T	T	S									S		S	S											S	S															T	T	T	T	T	T	T	T						S				G	.	G	G	G	T	T				S					T	T	T
Template Predicted Secondary structure																																																																.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	V	Q	G	E	H	L	I	I	V	A	T	E	D	N	L	L	K	G	A	A	A	Q	A	V	Q	C	A	N	I	R
Query Conservation
Alig confidence																				.
Template Conservation																				.
Template Sequence		I	Q	L	S	K	T	F	V	K	V	V	S	W	Y	D	N	E	F	.	G	Y	S	Q	R	V	I	D	L	I	K	H	M
Template Known Secondary structure						T	T										T	T		.
Template Predicted Secondary structure																				.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions