Job Description P11446 Confidence 100.00% Date Thu Jan 5 11:32:37 GMT 2012 Rank 46 Aligned Residues 296 % Identity 12% Template c1i32D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase; PDBTitle: leishmania mexicana glyceraldehyde-3-phosphate2 dehydrogenase in complex with inhibitors Resolution 2.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.					.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																									.	.	.	.													.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.													.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	T	L	I	V	G	A	S	G	Y	A	G	A	E	L	V	T	Y	V	N	R	H	.	.	.	.	P	H	M	N	I	T	A	L	T	V	S	A	.	Q	S	N	D	A	G	K	L	I	S	D	L	H	P	Q	L	K	G	I	V	D	L	P	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.	.	.	.													.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.																.	.	.	.													.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.
Template Sequence		I	K	V	G	I	N	G	.	F	G	R	I	G	R	M	V	F	Q	A	I	C	D	Q	G	L	I	G	T	E	I	D	V	V	A	V	V	D	M	S	T	N	A	E	Y	F	A	Y	Q	M	K	H	D	T	V	H	G	R	P	K	Y	T	V	E	A	V	K	S	S	P	S	V	E	T	A	D	V	L	V	V	N
Template Known Secondary structure									.		S													T	T		B	T	T	T									S															T	T	T		S		S	S							S	S	T	T		S	S							T
Template Predicted Secondary structure									.
Template SS confidence
		3	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
													62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	P	M	S	D	I	S	E	F	S	P	G	V	D	V	V	F	L	A	T	A	H	E	V	S	H	D	L	A	P	Q	F	L	E	A	G	C	V	V	F	D	L	S	G	A	F	R	V	N	D	A	T	F	Y	E	K	Y	Y	G	F	T	H	Q	Y	P	E	L	L	E	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	H	R	I	K	C	V	K	A	Q	R	N	P	A	D	L	P	W	G	K	L	G	V	D	Y	V	I	E	S	T	G	L	F	T	D	K	L	K	A	E	G	H	I	K	G	G	A	K	K	V	V	I	S	A	P	A	S	G	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T
Template Known Secondary structure		T										S	S	G	G	G	S						T								S	S	S			B					T					T	T		S					S	S			B	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.																			.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																.	.																							.																						.	.	.	.
Query SS confidence																.	.																							.																						.	.	.	.
Query Sequence		A	A	Y	G	L	A	E	W	C	G	N	K	L	K	.	.	E	A	N	L	I	A	V	P	G	C	Y	P	T	A	A	Q	L	A	L	K	P	L	.	I	D	A	D	L	L	D	L	N	Q	W	P	V	I	N	A	T	S	G	V	S	.	.	.	.	G	A	G	R	K	A	A	I	S	N	S	F	C	E	V	S
Query Conservation																.	.																							.																						.	.	.	.
Alig confidence							.	.	.							.	.																							.																						.	.	.	.
Template Conservation							.	.	.
Template Sequence		I	V	M	G	V	.	.	.	N	Q	H	E	Y	S	P	A	S	H	H	V	V	S	N	A	S	C	T	T	N	C	L	A	P	I	V	H	V	L	T	K	E	N	F	G	I	E	T	G	L	M	T	T	I	H	S	Y	T	A	T	Q	K	T	V	D	G	V	S	L	K	D	W	R	G	G	R	A	A	A	V	N
Template Known Secondary structure				T	T	T	.	.	.	S	G	G	G			T	T	T		S																						T	T				S												T	T	S	B	S	S	S				S	S		T	G	G	G	S	B	G	G	G
Template Predicted Secondary structure							.	.	.
Template SS confidence
		144	.	.	.	.				.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																																																		.	.
Query SS confidence																																																																		.	.
Query Sequence		L	Q	P	Y	G	V	F	T	H	R	H	Q	P	E	I	A	T	H	L	G	A	D	V	I	F	T	P	H	L	G	N	F	P	R	G	I	L	E	T	I	T	C	R	L	K	S	G	V	T	Q	A	Q	V	A	Q	V	L	Q	Q	A	Y	A	H	K	.	.	P	L	V	R	L	Y	D	K	G	V	P	A	L	K
Query Conservation																																																																		.	.
Alig confidence																																																																		.	.													.
Template Conservation																																																																																.
Template Sequence		I	I	P	S	T	T	G	A	A	K	A	V	G	M	V	I	P	S	T	K	G	K	L	T	G	M	S	F	R	V	P	T	P	D	V	S	V	V	D	L	T	F	R	A	T	R	D	T	S	I	Q	E	I	D	K	A	I	K	K	A	A	Q	T	Y	M	K	G	I	L	G	F	T	D	E	E	L	V	S	.	A
Template Known Secondary structure								S									S	G	G	G	T	T	T									S		S	S											S	S																	T	T	T	T	T	T						S				G	.	G
Template Predicted Secondary structure																																																																																.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.													.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	V	V	G	L	P	F	C	D	I	G	F	A	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	G	E	H	L	I	I	V	A	T	E	D	N	L	L	K	G	A	A	A	Q	A	V	Q	C	A	N	I	R
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.						.	.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation									.	.	.																																.
Template Sequence		D	F	I	N	D	N	R	.	.	.	S	S	V	Y	D	S	K	A	T	L	Q	N	N	L	P	G	E	K	R	F	F	K	V	V	S	W	Y	D	N	E	W	.	A	Y	S	H	R	V	V	D	L	V	R	Y	M
Template Known Secondary structure		G	G	T	T				.	.	.	S										T	T	S		T	T		S	S										T	T		.
Template Predicted Secondary structure									.	.	.																																.
Template SS confidence
		300	.	.	.	.	.	.				.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions