Job Description P11446 Confidence 100.00% Date Thu Jan 5 11:32:37 GMT 2012 Rank 25 Aligned Residues 298 % Identity 15% Template c1hdgO_ PDB info PDB header:oxidoreductase (aldehy(d)-nad(a)) Chain: O: PDB Molecule:holo-d-glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: the crystal structure of holo-glyceraldehyde-3-phosphate dehydrogenase2 from the hyperthermophilic bacterium thermotoga maritima at 2.53 angstroms resolution Resolution 2.50 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.																		.	.
Predicted Secondary structure																								.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	T	L	I	V	G	A	S	G	Y	A	G	A	E	L	V	T	Y	V	N	R	H	.	.	P	H	M	N	I	T	A	L	T	V	S	A	Q	S	N	D	A	G	K	L	I	S	D	L	H	P	Q	L	K	G	I	V	D	L	P	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	M
Query Conservation																								.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.															.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.
Template Sequence		R	V	A	I	N	G	F	.	G	R	I	G	R	L	V	Y	R	I	I	Y	E	R	K	N	P	D	I	E	V	V	A	I	N	D	L	T	D	T	K	T	L	A	H	L	L	K	Y	D	S	V	H	K	K	F	P	G	K	V	E	Y	T	E	N	S	L	I	V	D	G	K	E	I	K	V	F	A	E	P	D	P
Template Known Secondary structure									.	S														T		T	T									S	S													T	T	T				S	S						S	S					T	T									S	S	G
Template Predicted Secondary structure									.
Template SS confidence
		2	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	I	S	E	F	S	P	G	V	D	V	V	F	L	A	T	A	H	E	V	S	H	D	L	A	P	Q	F	L	E	A	G	C	V	V	F	D	L	S	G	A	F	R	V	N	D	A	T	F	Y	E	K	Y	Y	G	F	T	H	Q	Y	P	E	L	L	E	Q	A	A	Y	G	L	A	E	W	C	G	N	K	L
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	K	L	P	W	K	D	L	G	V	D	F	V	I	E	S	T	G	V	F	R	N	R	E	K	A	E	L	H	L	Q	A	G	A	K	K	V	I	I	T	A	P	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	D	I	T	V	V	I	G	C	N	E	D	Q	L
Template Known Secondary structure		G	G	S						T								S	S	S			B					T					T	T		S					S	S			B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S					T	T	T	T	G	G	G
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.																						.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		144	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.																																									.	.	.
Query SS confidence						.																																									.	.	.
Query Sequence		K	E	A	N	.	L	I	A	V	P	G	C	Y	P	T	A	A	Q	L	A	L	K	P	L	I	D	A	D	L	L	D	L	N	Q	W	P	V	I	N	A	T	S	G	V	S	.	.	.	G	A	G	R	K	A	A	I	S	N	S	F	C	E	V	S	L	Q	P	Y	G	V	F	T	H	R	H	Q	P	E	I	A
Query Conservation						.																																									.	.	.
Alig confidence						.																																									.	.	.
Template Conservation
Template Sequence		K	P	E	H	T	I	I	S	C	A	S	C	T	T	N	S	I	A	P	I	V	K	V	L	H	E	K	F	G	I	V	S	G	M	L	T	T	V	H	S	Y	T	N	D	Q	R	V	L	D	L	P	H	K	D	L	R	R	A	R	A	A	A	V	N	I	I	P	T	T	T	G	A	A	K	A	V	A	L	V	V
Template Known Secondary structure			T	T																																								T	T	S	B	S	S	S				S	S	T	T	T	T	S	B	G	G	G								T
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.						.
Predicted Secondary structure																																																	.	.																										.	.	.	.	.
Query SS confidence																																																	.	.																										.	.	.	.	.
Query Sequence		T	H	L	G	A	D	V	I	F	T	P	H	L	G	N	F	P	R	G	I	L	E	T	I	T	C	R	L	K	S	G	V	T	Q	A	Q	V	A	Q	V	L	Q	Q	A	Y	A	H	.	.	K	P	L	V	R	L	Y	D	K	G	V	P	A	L	K	N	V	V	G	L	P	F	C	D	I	.	.	.	.	.	G
Query Conservation																																																	.	.																										.	.	.	.	.
Alig confidence																																																	.	.														.												.	.	.	.	.
Template Conservation																																																																.
Template Sequence		P	E	V	K	G	K	L	D	G	M	A	I	R	V	P	T	P	D	G	S	I	T	D	L	T	V	L	V	E	K	E	T	T	V	E	E	V	N	A	V	M	K	E	A	T	E	G	R	L	K	G	I	I	G	Y	N	D	E	P	I	V	S	.	S	D	I	I	G	T	T	F	S	G	I	F	D	A	T	I	T
Template Known Secondary structure		G	G	G	T	T	T									S		S	S											S	S																T	T	T	T	T	T	T						S				G	.	G	G	G	T	T				S					T	T	T
Template Predicted Secondary structure																																																																.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	V	Q	G	E	H	L	I	I	V	A	T	E	D	N	L	L	K	G	A	A	A	Q	A	V	Q	C	A	N	I	R
Query Conservation
Alig confidence																				.
Template Conservation																				.
Template Sequence		N	V	I	G	G	K	L	V	K	V	A	S	W	Y	D	N	E	Y	.	G	Y	S	N	R	V	V	D	T	L	E	L	L
Template Known Secondary structure					T	T	T										T	T		.													G
Template Predicted Secondary structure																				.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions