Job Description P11446 Confidence 100.00% Date Thu Jan 5 11:32:37 GMT 2012 Rank 24 Aligned Residues 298 % Identity 14% Template c1cf2Q_ PDB info PDB header:oxidoreductase Chain: Q: PDB Molecule:protein (glyceraldehyde-3-phosphate PDBTitle: three-dimensional structure of d-glyceraldehyde-3-phosphate2 dehydrogenase from the hyperthermophilic archaeon3 methanothermus fervidus Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.								.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.
Query Sequence		M	L	N	T	L	I	V	G	A	S	G	Y	A	G	A	E	L	V	T	Y	V	N	R	H	P	H	M	N	I	T	A	L	T	V	S	A	Q	S	N	D	A	G	K	L	I	S	D	L	H	P	Q	L	K	G	.	.	.	.	.	.	.	I	V	D	L	P	L	Q	P	M	S	D	I	S	E	F	S	P	G	V
Query Conservation																																																								.	.	.	.	.	.	.
Alig confidence										.																																														.	.	.	.	.	.	.
Template Conservation										.
Template Sequence		M	K	A	V	A	I	N	G	.	Y	G	T	V	G	K	R	V	A	D	A	I	A	Q	Q	D	D	M	K	V	I	G	V	S	K	T	R	P	D	F	E	A	R	M	A	L	K	K	G	Y	D	L	Y	V	A	I	P	E	R	V	K	L	F	E	K	A	G	I	E	V	A	G	T	V	D	D	M	L	D	E	A
Template Known Secondary structure										.		S	T	T											S	T	T									S	S		S									T	T						S	S	G	G	G							T	T													T
Template Predicted Secondary structure										.
Template SS confidence
		1	.	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	V	F	L	A	T	A	H	E	V	S	H	D	L	A	P	Q	F	L	E	A	G	C	V	V	F	D	L	S	G	A	F	R	V	N	D	A	T	F	Y	E	K	Y	Y	G	F	T	H	Q	Y	P	E	L	L	E	Q	A	A	Y	G	L	A	E	W	C	G	N	K	L	K	E	A	N	L	I	A	V	P	G
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Sequence		D	I	V	I	D	C	T	P	E	G	I	G	A	K	N	L	K	M	Y	K	E	K	G	I	K	A	I	F	Q	G	G	E	K	H	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	L	S	F	N	.	S	L	S	N	Y	E	E	S	Y	G	K	D	Y	T	R	V	V	S
Template Known Secondary structure		S								T	T													T							T	T	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S					.					G	G	G	G	T	T		S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.																				.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	Y	P	T	A	A	Q	L	A	L	K	P	L	I	D	A	D	L	L	D	L	N	Q	W	P	V	I	N	A	T	S	G	V	S	G	A	G	R	K	A	A	I	S	N	S	F	C	E	V	S	L	Q	P	Y	G	V	F	T	H	R	H	Q	P	E	I	A	T	H	L	G	A	D	V	I	F	T	P	H	L	G
Query Conservation
Alig confidence																																							.																.	.	.	.	.
Template Conservation																																							.																.	.	.	.	.
Template Sequence		C	N	T	T	G	L	C	R	T	L	K	P	L	H	D	S	F	G	I	K	K	V	R	A	V	I	V	R	R	G	A	D	P	A	Q	V	S	.	K	G	P	I	N	A	I	I	P	N	P	P	K	L	P	.	.	.	.	.	S	H	H	G	P	D	V	K	T	V	L	D	I	N	I	D	T	M	A	V	I	V
Template Known Secondary structure																															S	S		T	T		T	T	.				S	S					S	S	S	S	S	S	.	.	.	.	.		T							T	T	S		S
Template Predicted Secondary structure																																							.																.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.						.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.									.	.	.	280	.	.	.	.	.	.	.	.	.	290	.									.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Query Sequence		N	F	P	R	G	I	L	E	T	I	T	C	R	L	K	S	G	V	T	Q	A	Q	V	A	Q	V	L	Q	Q	A	Y	A	H	K	P	L	V	R	L	Y	D	K	G	.	.	.	.	.	.	.	.	V	P	A	L	K	N	V	V	G	L	P	F	C	D	I	.	.	.	.	.	.	.	.	G	F	A	V	Q	G
Query Conservation																																													.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.										.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.
Template Sequence		P	T	T	L	M	H	Q	H	N	V	M	V	E	V	E	E	T	P	T	V	D	D	I	I	D	V	F	E	D	T	.	.	.	.	P	R	V	I	L	I	S	A	E	D	G	L	T	S	T	A	E	I	M	E	Y	A	K	E	L	G	R	S	R	N	D	L	F	E	I	P	V	W	R	E	S	I	T	V	V	D
Template Known Secondary structure		S		S	S											S	S														S	.	.	.	.	T	T						G	G	G	T			S												T		G	G	G				S					G	G	G					T
Template Predicted Secondary structure																																.	.	.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.					.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	L	I	I	V	A	T	E	D	N	L	L	K	G	A	A	A	Q	A	V	Q	C	A	N	I	R	F	G	Y	A	E	T
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		N	E	I	Y	Y	M	Q	A	V	H	Q	E	S	.	D	I	V	P	E	N	V	D	A	V	R	A	I	L	E	M	E	E	D
Template Known Secondary structure		T										T	T	T	.	T	T												T	T	S		S
Template Predicted Secondary structure															.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions