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Job DescriptionP23843
Confidence100.00%DateThu Jan 5 11:39:51 GMT 2012
Rank10Aligned Residues474
% Identity23%Templated1uqwa_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution2.72

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3940.........50.........60.........70.........80.........90. ........100.........110.......
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Query Sequence  QTLVRNNGSEVQSLDPHKIEGVPESNISRDLFEGLLVSDLDGHPAPGVAESWD. NKDAKVWTFHLRKDAKWSDGTPVTAQ
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Template Sequence  KDVVVAVGSNFTTLDPYDANDTLSQAVAKSFYQGLFGLDKEXKLKNVLAESYTVSDDGITYTVKLREGIKFQDGTDFNAA
Template Known Secondary structure 
SS



S
GGG

STTT


S
TTS
SS
TTSS
TT
B
TTS
B

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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   118.120.........130.........140.........150.........160.........170.........180.........190.......
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Query Sequence  DFVYSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKPITDLGVKAIDDHTLEVTLSEPVPYFYKLLVHPSTSPVPKAA
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Template Sequence  AVKANLDRASDPANHLKRHNLYKN. . . . . . . . . . . . . . . . . IAKTEAIDPTTVKITLKQPFSAFINILAHPATAXISPAA
Template Known Secondary structure  T
GGG

TTGGGTTT.................TTSS

TTTSTT




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   85....90.........100........ .110.........120.........130.........140.......
 
   198.200.........210.........220.........230.........240.........250.........260.........270.......
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Query Sequence  IEKFGEKWTQPGNIVTNGAYTLKDWVVNERIVLERSPTYWNNAKTVINQVTYLPIASEVTDVNRYRSGEIDMTNNSMPIE
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Template Sequence  LEKYGKE. . IGFYPVGTGPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSITWRPVADNNTRAAXLQTGEAQFAFP. IPYE
Template Known Secondary structure  GGG..TTTS


SSSTTT
TT
SSTT



S


TS
S
S.

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   148.150.... .....160.........170.........180.........190.........200.........210.........220 ....
 
   278.280.........290.........300.........310.........320.........330.........340.........350.......
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Query Sequence  LFQKLKKEIPDEVHVDPYLCTYYYEINNQKPPFNDVRVRTALKLGMDRDIIVNKVKAQGNMPAYGYTPPYTDGAKLTQPE
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Template Sequence  QATLLEKNKNIELXASPSIXQRYISXNVTQKPFDNPKVREALNYAINRPALVKVAFAGYATPATGVVPPSIAYAQSYKP.
Template Known Secondary structure 
TT
TTSTGGGS

TT

SSSS
TTSBT





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   225....230.........240.........250.........260.........270.........280.........290.........300...
 
   358.360.........370.........380.........390.........400.........410.........420.........430..
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Query Sequence  WFGWSQEKRNEEAKKLLAEAGYTADKPLTINLLYNTSDLHKKLAIAASSLWKKNIGVNVKLVNQEWKTFLDTRHQ. . . . .
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Template Sequence  . . . . . WPYDPVKARELLKEAGYPN. . GFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAXDAGQRAAEVEGKGQKE
Template Known Secondary structure  .....



T
TT..


SSSTT
TTS

TTT
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   304.....310.........320.. .......330.........340.........350.........360.........370......
 
   433......440.........450...... ...460.........470.........480.........490.........500.......
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Query Sequence  GTFDVARAGWCADYNEPTSFLNTM. . . . . LSNSSMNTAHYKSPAFDSIMAETLKVTDEAQRTALYTKAEQQLDKDSAIVP
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Template Sequence  SGVRXFYTGWSASTGEADWALSPLFASQNWPPTLFNTAFYSNKQVDDFLAQALKTNDPAEKTRLYKAAQDIIWQESPWIP
Template Known Secondary structure 




TTSB
GGGTTTTS

TT



T




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   377..380.........390.........400.........410.........420.........430.........440.........450......
 
   508.510.........520.........530.........540.
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Query Sequence  VYYYVNARLVKPWVGGYTGKDPLDNTYTRNMYIV
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Template Sequence  LVVEKLVSAHSKNLTGFWI. XPDTGFSFEDADLQ
Template Known Secondary structure  TTS
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TTS

TT

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   457..460.........470..... ....480.........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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