Job Description P23843 Confidence 100.00% Date Thu Jan 5 11:39:51 GMT 2012 Rank 9 Aligned Residues 465 % Identity 23% Template c3t66A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nickel abc transporter (nickel-binding protein); PDBTitle: crystal structure of nickel abc transporter from bacillus halodurans Resolution 2.80 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		K	Q	T	L	V	R	N	N	G	S	E	V	Q	S	L	D	P	H	K	I	E	G	V	P	E	S	N	I	S	R	D	L	F	E	G	L	L	V	S	D	L	D	G	.	H	P	A	P	G	V	A	E	S	W	D	N	K	D	A	K	V	W	T	F	H	L	R	K	D	A	K	W	S	D	G	T	P	V	T	A
Query Conservation																																													.
Alig confidence																			.	.																									.
Template Conservation																			.	.
Template Sequence		E	K	H	I	H	F	L	F	N	V	S	T	N	S	L	D	P	.	.	H	V	D	M	T	Y	I	P	V	R	A	G	I	T	E	T	L	V	R	V	D	E	E	N	V	T	I	A	P	W	L	A	E	S	W	D	S	T	D	G	Q	H	W	T	I	K	L	R	E	D	V	T	F	Q	N	G	K	E	M	D	A
Template Known Secondary structure										S				S				T	.	.	T	T		S	S						T	T	S		B		S					T	T	T		S				S	S							S	S	S	S								S	S		B		T	T	S		B
Template Predicted Secondary structure																			.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	F	V	Y	S	W	Q	R	S	V	D	P	N	T	A	S	P	Y	A	S	Y	L	Q	Y	G	H	I	A	G	I	D	E	I	L	E	G	K	K	P	I	T	D	L	G	V	K	A	I	D	D	H	T	L	E	V	T	L	S	E	P	V	P	Y	F	Y	K	L	L	V	H	P	S	T	S	P	V	P	K	A
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	V	K	A	S	L	E	R	A	L	D	E	S	V	A	I	E	N	A	L	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	I	E	A	D	G	Y	T	L	H	I	T	T	K	E	P	F	P	E	F	I	S	E	L	V	N	P	N	V	S	I	I	D	V	T
Template Known Secondary structure													T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T							S	S			T	T	T	G	G	G	G	G	S	G	G	G		B	B		T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.																						.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	E	K	F	G	E	K	W	T	Q	P	G	N	I	V	T	N	G	A	Y	T	L	K	D	W	V	V	N	E	R	I	V	L	E	R	S	P	T	Y	W	N	N	A	K	T	V	I	N	Q	V	T	Y	L	P	I	A	S	E	V	T	D	V	N	R	Y	R	S	G	E	I	D	M	T	N	N	S	M	P	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.																																			.																																			.
Template Conservation		.	.	.	.	.	.	.																																			.																																			.
Template Sequence		.	.	.	.	.	.	.	E	E	D	F	T	N	H	P	V	G	T	G	P	F	A	L	E	S	F	T	P	G	S	K	L	E	L	V	R	Y	D	E	Y	W	.	D	G	A	S	K	L	D	S	V	T	F	S	F	N	E	D	A	S	A	R	S	L	A	L	E	S	G	Q	A	D	I	V	Y	R	.	P	E	V
Template Known Secondary structure		.	.	.	.	.	.	.	S			T	T	T				B	S	S	S								T	T	T								T	T		T	.	T				S		S																			T	T	S		S				S	.			T
Template Predicted Secondary structure		.	.	.	.	.	.	.																																			.																																			.
Template SS confidence
									149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	F	Q	K	L	K	K	E	I	P	D	E	V	H	V	D	P	Y	L	C	T	Y	Y	Y	E	I	N	N	Q	K	P	P	F	N	D	V	R	V	R	T	A	L	K	L	G	M	D	R	D	I	I	V	N	K	V	K	A	Q	G	N	M	P	A	Y	G	Y	T	P	P	Y	T	D	G	A	K	L	T	Q	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	S	I	E	T	L	Q	A	N	E	G	I	M	V	E	A	T	E	T	F	R	T	H	N	L	T	M	N	L	D	R	D	S	L	K	D	V	N	V	R	R	A	V	D	V	L	L	D	R	Q	E	I	V	D	T	I	M	L	G	Y	A	E	V	A	D	G	P	F	I	P	T	L	P	F	A	P	S	Y	E	K
Template Known Secondary structure		T	T							S	T	T									S									T	T	S	T	G	G	G	S											S									T	T	T	T	S					S	S	S	S		T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380								.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.
Query Sequence		E	W	F	G	W	S	Q	E	K	R	N	E	E	A	K	K	L	L	A	E	A	G	Y	T	.	.	.	.	.	.	.	A	D	K	P	L	T	I	N	L	L	Y	N	T	S	D	L	H	K	K	L	A	I	A	A	S	S	L	W	K	K	N	I	G	V	N	V	K	L	V	N	Q	E	W	K	T	F	L	D	T
Query Conservation																										.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	K	E	T	G	T	D	I	A	I	Q	Y	L	E	E	A	G	Y	T	L	E	N	Q	M	Q	K	D	G	E	P	L	H	F	T	V	L	T	Y	G	S	R	A	E	L	P	L	I	A	Q	V	F	Q	S	N	A	K	Q	I	G	I	E	V	E	I	R	Q	I	E	V	P	E	E	Y	M	A
Template Known Secondary structure		.	.	.	.	.	.				S												T										T	T											S	S	S	T	T															T	T									S	S	S	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.		.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		R	H	Q	G	T	F	D	V	A	R	A	G	W	C	A	D	Y	N	E	P	T	S	F	L	N	T	.	M	L	S	N	S	S	M	N	T	A	H	Y	K	S	P	A	F	D	S	I	M	A	E	T	L	K	V	T	D	E	A	Q	R	T	A	L	Y	T	K	A	E	Q	Q	L	D	K	D	S	A	I	V	P	V
Query Conservation																												.
Alig confidence																												.
Template Conservation
Template Sequence		S	N	R	D	W	D	L	I	T	Y	S	N	V	T	S	P	R	G	D	A	G	Y	Y	L	N	A	T	Y	H	P	T	G	A	L	N	F	S	S	V	N	D	P	E	L	T	G	I	I	D	E	L	N	R	T	V	D	Q	D	V	R	A	K	L	T	E	Q	A	A	A	Y	I	D	E	Q	K	I	H	S	F	L
Template Known Secondary structure		T		T	T										S		T	T	S											S	T	T		T	T			S																T																					T	T
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
		509	510	.	.	.	.	.	.	.	.	.	520		.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		Y	Y	Y	V	N	A	R	L	V	K	P	W	.	V	G	G	Y	T	G	K	D	P	L	D	N	T	Y	T	R	N	M	Y	I
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		I	H	P	S	A	V	V	A	Y	D	E	N	K	V	K	N	W	V	T	T	R	S	E	Y	Y	M	I	T	N	Q	L	D	V
Template Known Secondary structure												T	T	T		B						S	S	S				S		T	T		B
Template Predicted Secondary structure
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.