Job Description P23843 Confidence 100.00% Date Thu Jan 5 11:39:51 GMT 2012 Rank 11 Aligned Residues 466 % Identity 17% Template c3rqtA_ PDB info PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: 1.5 angstrom crystal structure of the complex of ligand binding2 component of abc-type import system from staphylococcus aureus with3 nickel and two histidines Resolution 1.50 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	T	L	V	R	N	N	G	S	E	V	Q	S	L	D	P	H	K	I	E	G	V	P	E	S	N	I	S	R	D	L	F	E	G	L	L	V	S	D	L	D	G	H	P	A	P	G	V	A	E	S	W	D	N	K	D	A	K	V	W	T	F	H	L	R	K	D	A	K	W	S	D	G	T	P	V	T	A	Q
Query Conservation
Alig confidence																						.	.	.	.
Template Conservation																						.	.	.	.
Template Sequence		G	K	D	L	N	I	S	L	P	L	K	T	K	S	I	A	P	Y	E	T	.	.	.	.	D	V	P	V	K	I	G	A	A	E	S	L	F	K	T	N	D	Q	G	K	I	E	K	A	L	V	K	S	Y	H	Q	P	N	D	T	T	L	D	I	E	L	K	D	N	I	K	F	Q	N	G	Q	K	L	T	A	E
Template Known Secondary structure										S	S			S				T	T	T		.	.	.	.	S					T	T	S		B		S					T	T	S					S	S									T	T								S	S		B		T	T	S		B
Template Predicted Secondary structure																						.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.					.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	V	Y	S	W	Q	R	S	V	D	P	N	T	A	S	P	Y	A	S	Y	L	Q	Y	G	H	I	A	G	I	D	E	I	L	E	G	K	K	P	I	T	D	L	G	V	K	A	I	D	D	H	T	L	E	V	T	L	S	E	P	V	P	Y	F	Y	K	L	L	V	H	P	S	T	S	P	V	P	K	A	A
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.
Template Sequence		K	V	K	S	S	L	E	N	S	X	K	K	S	D	L	V	K	Y	S	L	P	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	I	T	A	K	G	Q	K	L	T	I	K	T	N	S	A	Y	P	E	L	V	S	E	L	A	N	P	F	X	A	I	Y	D	T	D	.
Template Known Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T							S	S			T	T					T	T	S	G	G	G		B			T	T	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.																						.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	K	F	G	E	K	W	T	Q	P	G	N	I	V	T	N	G	A	Y	T	L	K	D	W	V	V	N	E	R	I	V	L	E	R	S	P	T	Y	W	N	N	A	K	T	V	I	N	Q	V	T	Y	L	P	I	A	S	E	V	T	D	V	N	R	Y	R	S	G	E	I	D	M	T	N	N	S	M	P	I	E
Query Conservation
Alig confidence		.	.	.	.	.																																				.																																			.
Template Conservation		.	.	.	.	.																																				.																																			.
Template Sequence		.	.	.	.	.	A	K	S	D	V	N	Q	T	P	V	G	T	G	P	Y	Q	I	K	D	Y	K	Q	S	R	K	I	S	L	S	N	F	K	D	Y	W	.	Q	G	K	P	K	L	D	H	I	T	V	T	Y	Q	E	D	G	N	N	R	V	R	N	L	E	S	Q	K	D	D	L	I	T	D	.	V	P	V	N
Template Known Secondary structure		.	.	.	.	.		S	S		T	T	T	S				S	S	S								T	T	T								T	T		T	.	T	S			S		S																			T	T	S		S				S	.			G	G
Template Predicted Secondary structure		.	.	.	.	.																																				.																																			.
Template SS confidence
							139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	Q	K	L	K	K	E	I	P	D	E	V	H	V	D	P	Y	L	C	T	Y	Y	Y	E	I	N	N	Q	K	P	P	F	N	D	V	R	V	R	T	A	L	K	L	G	M	D	R	D	I	I	V	N	K	V	K	A	Q	G	N	M	P	A	Y	G	Y	T	P	P	Y	T	D	G	A	K	L	T	Q	P	E
Query Conservation
Alig confidence																																.																																																	.
Template Conservation																																.																																																	.
Template Sequence		K	V	Q	D	I	E	N	N	Q	N	L	K	V	S	K	E	S	G	F	R	T	S	L	L	X	Y	N	H	T	N	.	K	K	X	T	K	S	V	R	E	A	L	D	H	I	I	D	R	Q	G	I	A	D	H	I	Y	Q	G	Y	A	K	P	A	T	S	P	F	N	D	K	I	P	Y	I	K	E	P	K	L	.
Template Known Secondary structure		G								T	T																		T	T	S	.	T	T																						T	S	T	T	S					S	S	S	S		T	T	S	T	T							.
Template Predicted Secondary structure																																.																																																	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.		430	.	.	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		W	F	G	W	S	Q	E	K	R	N	E	E	A	K	K	L	L	A	E	A	G	Y	T	A	D	K	P	L	T	I	N	L	L	Y	N	T	S	D	L	H	K	K	L	A	I	A	A	S	S	L	W	K	K	N	I	G	V	N	V	K	L	V	N	Q	E	W	K	T	F	L	D	T	.	R	H	Q	G	T	F	D
Query Conservation																																																																										.
Alig confidence		.	.	.	.	.																																																																				.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	T	K	Q	N	I	E	Q	A	K	X	L	L	A	K	D	G	Y	T	K	E	H	P	L	K	I	K	L	I	T	Y	D	G	R	P	E	L	S	K	I	A	Q	V	L	Q	S	D	A	K	K	A	N	I	E	I	D	I	K	S	V	D	D	I	E	G	Y	L	K	D	R	S	A	W	D	A	T
Template Known Secondary structure		.	.	.	.	.														T	T	T			S	S	S										S	S	S	T															T	T	T									S						T	T		T	T	S		S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	R	A	G	W	C	A	D	Y	N	E	P	T	S	F	L	N	T	M	L	S	N	S	S	M	N	T	A	H	Y	K	S	P	A	F	D	S	I	M	A	E	T	L	K	V	T	D	E	A	Q	R	T	A	L	Y	T	K	A	E	Q	Q	L	D	K	D	S	A	I	V	P	V	Y	Y	Y	V	N	A	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	Y	S	F	G	T	I	P	R	G	D	T	G	Y	F	F	N	Q	A	Y	K	K	D	G	A	I	N	K	G	D	Y	N	N	S	N	V	D	D	L	I	N	Q	L	N	H	T	V	D	V	K	E	R	H	N	I	S	N	D	I	I	K	L	S	S	R	D	V	P	N	S	Y	I	A	Y	N	D	Q	I	V	A
Template Known Secondary structure							S		T	T	S		T								T	S	T	T		T	T		T	T																T																							S
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		517	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	P	W	V	G	G	Y	T	G	K	D	P	L	D	N	T	Y	T	R	N	M	Y	I	V	K	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	N	S	K	V	K	N	Y	K	V	T	P	E	G	I	Y	L	I	D	Y	R	T	T	I	E	H	H
Template Known Secondary structure				T	T								T	T	S						T	T
Template Predicted Secondary structure
Template SS confidence
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.