Job Description P23843 Confidence 100.00% Date Thu Jan 5 11:39:51 GMT 2012 Rank 5 Aligned Residues 490 % Identity 23% Template c3m8uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:heme-binding protein a; PDBTitle: crystal structure of glutathione-binding protein a (gbpa) from2 haemophilus parasuis sh0165 in complex with glutathione disulfide3 (gssg) Resolution 1.85 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																													.																.													.
Query SS confidence																													.																.													.
Query Sequence		K	Q	T	L	V	R	N	N	G	S	E	V	Q	S	L	D	P	H	K	I	E	G	V	P	E	S	N	.	I	S	R	D	L	F	E	G	L	L	V	S	D	L	D	.	G	H	P	A	P	G	V	A	E	S	W	D	.	N	K	D	A	K	V	W	T	F	H	L	R	K	D	A	K	W	S	D	G	T	P	V
Query Conservation																													.																.													.
Alig confidence																													.																.													.
Template Conservation
Template Sequence		D	K	T	F	I	N	C	V	S	R	S	P	T	G	F	S	P	A	L	V	M	D	G	I	S	Y	N	A	S	S	Q	Q	V	Y	N	R	L	V	E	F	K	R	G	S	T	D	I	E	P	A	L	A	E	S	W	T	V	S	D	D	G	L	T	Y	T	F	N	L	R	K	G	V	K	F	H	S	N	K	E	F
Template Known Secondary structure										S	S			S		S		G	G	G										T								S					T	T	S	S					S	S								T	T	S									S	S						B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		115							.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.
Query Sequence		T	.	.	.	.	.	.	A	Q	D	F	V	Y	S	W	Q	R	S	V	D	P	N	T	A	S	P	Y	A	S	Y	L	Q	Y	G	H	I	A	G	I	D	E	I	L	E	G	K	K	P	I	T	D	L	G	V	K	A	I	D	D	H	T	L	E	V	T	L	S	E	P	V	P	Y	F	Y	K	L	L	V	H	P
Query Conservation			.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.																											.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.
Template Sequence		T	P	S	R	D	F	N	A	D	D	V	V	F	S	F	Q	R	Q	L	D	P	N	H	P	Y	H	N	V	S	K	A	T	Y	.	.	.	.	.	.	P	Y	F	K	A	M	K	F	S	T	L	L	K	S	V	E	K	V	D	M	H	T	V	K	I	T	L	N	R	Q	D	A	T	F	L	A	S	L	G	M	D
Template Known Secondary structure				S	S																	T	T	S	T	T	T	T	G	G	G				.	.	.	.	.	.						T	T													T	T							S	S			T	T					T	T	S	G
Template Predicted Secondary structure																																			.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.							.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.				.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		S	T	S	P	V	P	K	A	A	I	E	K	F	G	.	.	.	E	K	W	T	Q	P	G	N	I	V	T	N	G	A	Y	T	L	K	D	W	V	V	N	E	R	I	V	L	E	R	S	P	T	Y	W	N	N	A	K	T	V	I	N	Q	V	T	Y	L	P	I	A	S	E	V	T	D	V	N	R	Y	R	S	G
Query Conservation																.	.	.
Alig confidence																.	.	.																																				.
Template Conservation																																																						.
Template Sequence		F	I	S	I	Y	S	A	E	Y	A	D	K	M	L	A	A	G	K	P	E	T	I	D	T	T	P	I	G	T	G	P	F	L	F	A	G	Y	Q	V	D	Q	K	S	R	Y	L	A	H	K	E	Y	W	.	K	G	K	A	D	I	D	R	L	I	F	E	I	V	P	D	A	T	A	R	Y	A	K	L	Q	A	G
Template Known Secondary structure		G	G														T	T		T	T					S				S	S	S								T	T	T								T	T		T	.	T				S		S																				T
Template Predicted Secondary structure																																																						.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	D	M	T	N	N	S	M	P	I	E	L	F	Q	K	L	K	K	E	I	P	D	E	V	H	V	D	P	Y	L	C	T	Y	Y	Y	E	I	N	N	Q	K	P	P	F	N	D	V	R	V	R	T	A	L	K	L	G	M	D	R	D	I	I	V	N	K	V	K	A	Q	G	N	M	P	A	Y	G	Y	T	P
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		A	C	D	L	I	D	F	.	P	N	A	A	D	L	E	K	M	K	T	D	P	K	V	N	L	H	S	Q	S	G	L	N	I	A	Y	I	A	F	N	T	E	K	A	P	F	D	N	V	K	V	R	Q	A	L	N	Y	A	V	D	K	N	A	I	I	D	A	V	Y	R	G	A	G	V	A	A	K	N	P	L	P
Template Known Secondary structure		S		S			S	S	.										T	S		T	T									S									T	T	S	T	T	T	T	S										T										T	T	T	T	S					S	S	S	S
Template Predicted Secondary structure									.
Template SS confidence
		257	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.			.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence		P	Y	T	D	G	A	K	L	T	Q	P	E	W	F	G	W	S	Q	E	K	R	N	E	E	A	K	K	L	L	A	E	A	G	Y	T	A	D	K	.	.	P	L	T	I	N	L	L	Y	N	T	S	D	L	H	K	K	L	A	I	A	A	S	S	L	W	K	K	N	I	G	V	N	V	K	L	V	N	Q	E	W
Query Conservation																																								.	.
Alig confidence													.	.	.	.	.																							.	.
Template Conservation													.	.	.	.	.
Template Sequence		P	T	I	W	G	Y	N	N	E	I	T	.	.	.	.	.	G	Y	E	Y	S	P	E	K	A	K	Q	L	L	K	E	A	G	F	E	N	G	F	E	T	D	I	W	V	Q	P	V	V	R	A	S	N	P	N	P	R	R	M	A	E	L	V	Q	S	D	W	E	K	V	G	V	K	S	K	L	V	S	Y	E	W
Template Known Secondary structure		T	T	S	T	T			T	T			.	.	.	.	.																T	T		T	T										S	S		B	T	T	B	S															T	T	T
Template Predicted Secondary structure													.	.	.	.	.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.						.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.				460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		K	T	F	L	D	T	R	H	Q	G	T	F	D	V	A	R	A	G	W	C	A	D	Y	N	E	P	T	S	F	L	N	T	M	L	S	N	.	.	.	S	S	M	N	T	A	H	Y	K	S	P	A	F	D	S	I	M	A	E	T	L	K	V	T	D	E	A	Q	R	T	A	L	Y	T	K	A	E	Q	Q	L	D
Query Conservation																																						.	.	.
Alig confidence																																						.	.	.
Template Conservation
Template Sequence		G	D	Y	I	K	R	T	K	A	G	E	L	T	A	G	T	Y	G	W	S	G	D	N	G	D	P	D	N	F	L	S	P	L	F	G	S	E	N	V	G	N	S	N	Y	A	R	F	K	N	P	E	L	D	A	L	L	H	K	A	V	G	L	S	D	K	A	E	R	A	K	I	Y	E	Q	A	Q	V	L	L	K
Template Known Secondary structure										T	T			S									S	S	S		T										G	G	G	B	T	T	T	B	T	T																T		S
Template Predicted Secondary structure
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	S	A	I	V	P	V	Y	Y	Y	V	N	A	R	L	V	K	P	W	V	G	G	Y	T	G	K	D	P	L	D	N	T	Y	T	R	N	M	Y	I	V
Query Conservation
Alig confidence																														.
Template Conservation																														.
Template Sequence		E	Q	A	P	W	I	N	V	A	H	S	I	N	F	A	P	T	S	K	R	V	Q	D	Y	K	Q	S	P	.	F	G	Y	T	Y	L	Y	G	T	K	L	A
Template Known Secondary structure					S															T	T			S					T	.	T	S					T	T
Template Predicted Secondary structure																														.
Template SS confidence
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.		.	520	.	.	.	.	.	.	.	.	.	530