Job Description P23843 Confidence 100.00% Date Thu Jan 5 11:39:51 GMT 2012 Rank 19 Aligned Residues 216 % Identity 19% Template c3lvuB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding protein; PDBTitle: crystal structure of abc transporter, periplasmic substrate-binding2 protein spo2066 from silicibacter pomeroyi Resolution 1.79 Å

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		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	L	C	T	Y	Y	Y	E	I	N	N	Q	K	P	P	F	N	D	V	R	V	R	T	A	L	K	L	G	M	D	R	D	I	I	V	N	K	V	K	A	Q	G	N	M	P	A	Y	G	Y	T	P	P	Y	T	D	G	A	K	L	T	Q	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	A	G	X	T	G	F	V	I	N	T	R	R	A	P	F	D	D	W	R	L	R	E	A	L	L	L	A	F	N	F	E	F	I	N	D	T	V	T	G	G	V	X	P	R	I	T	S	Y	F	S	G	T	D	L	A	Y	R	P	G	T	A	S	G	R	E	A	E	L	L	A	P	F	A	A	D	L	P	P	G
Template Known Secondary structure												T	T	S	T	T	T	T	S																						T	T		S					S	T	T	T	T	S	T	T	S			S	S	S										G	G	G	T	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
												358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.										380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	W	F	G	W	S	Q	E	K	R	N	E	E	A	K	K	L	L	A	E	A	G	Y	.	.	.	.	.	.	.	.	.	T	A	D	K	P	L	T	I	N	L	L	Y	N	T	S	D	L	H	K	K	L	A	I	A	A	S	S	L	W	K	K	N	I	G	V	N	V	K	L
Query Conservation		.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	E	G	Y	A	L	P	Q	G	D	G	T	A	R	N	R	T	N	L	R	R	A	A	Q	F	L	E	Q	A	G	F	R	I	E	Q	G	Q	L	L	G	P	D	G	A	P	L	A	L	R	F	L	L	R	Q	G	D	S	D	X	Q	T	V	L	E	I	Y	T	R	A	L	E	R	L	G	I	A	A	Q	I
Template Known Secondary structure													S	S	S	S															T	T					T	T					T	T	S	S	B									T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.						.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
Predicted Secondary structure																																														.	.	.	.	.
Query SS confidence																																														.	.	.	.	.
Query Sequence		V	N	Q	E	W	K	T	F	L	D	T	R	H	Q	G	T	F	D	V	A	R	A	G	W	C	A	D	Y	N	E	P	T	S	F	L	N	T	M	L	S	N	S	S	M	.	.	.	.	.	N	T	A	H	Y	K	S	P	A	F	D	S	I	M	A	E	T	L	K	V	T	D	E	A	Q	R	T	A	L	Y	T
Query Conservation																																														.	.	.	.	.
Alig confidence																																														.	.	.	.	.
Template Conservation
Template Sequence		E	K	V	D	N	A	Q	Y	T	A	R	V	A	E	L	D	F	D	L	T	P	F	R	R	D	L	S	L	S	P	G	N	E	Q	R	L	Y	W	G	S	H	S	A	G	Q	P	G	T	R	N	L	X	G	A	A	S	P	A	I	D	A	X	I	D	R	X	L	A	A	T	T	E	D	E	L	T	A	A	T	R
Template Known Secondary structure															T	T			S										S	S			T								G	G	G	T	T		T	T		S		T	T																			S
Template Predicted Secondary structure
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
		494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	E	Q	Q	L	D	K	D	S	A	I	V	P	V	Y	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	D	R	V	L	T	A	G	R	Y	V	I	P	I	W	R
Template Known Secondary structure										T	T
Template Predicted Secondary structure
Template SS confidence
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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