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Job DescriptionP23843
Confidence100.00%DateThu Jan 5 11:39:51 GMT 2012
Rank6Aligned Residues513
% Identity20%Templatec2wokA_
PDB info PDB header:peptide binding protein/peptideChain: A: PDB Molecule:clavulanic acid biosynthesis oligopeptide PDBTitle: clavulanic acid biosynthesis oligopeptide2 binding protein 2 complexed with bradykinin
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.........70.........80 ......... 90. ..
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Query Sequence  GNVALAADVPAGVTLAEKQTLVRNNGSEVQSLDPHKIEGVPESNISRDLFEGLLVSDLDG. . . . . HPAPGVAES. WD. NK
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Template Sequence  AGWDAGVGALVNPSRRRGGTLRLVSSADVDSLDPARTYYVWVWLLQRLLNRTLMAYPTDPGPAGLVPAPDLAEGPGEVSD
Template Known Secondary structure  S
TTTTSSS
BS





SSS

S
SSTTS





S

S
SSGGGGS
SSBSSS
G
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   15....20.........30.........40.........50.........60.........70.........80.........90....
 
   94.....100.........110.........120.........130.........140.........150...... ...160.........170.
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Query Sequence  DAKVWTFHLRKDAKWSDGTPVTAQDFVYSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKP. . ITDLGVKAIDDHTLE
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Template Sequence  GGRTWTYRLRRGLRYDDGTPITSDDVRHAVQRVFAQDVLPGGPTYLIPL. LDDPERPYPGPYRTDEPLRSVLTPDEHTIV
Template Known Secondary structure  GGTB
SS
B
TTS
B

TT
TTTSTTS

T.
BTTB



TTT

S

TTTT
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   95....100.........110.........120.........130.........140... ......150.........160.........170...
 
   172.......180.........190.........200.........210.........220.........230......... 240.......
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Query Sequence  VTLSEPVPYFYKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYTLKDWVVNERIVLERSPTYWNN. . . . AKTVINQV
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Template Sequence  FRLTRPFSDFDHLMAQPCAAPVPRR. . . . SDTGADYGRDPRSSGPYRVARHEPDTLLHLERNPHWDRATDPIRPALPDRV
Template Known Secondary structure 
SS

TTTSGGGS


GG....G

GGGGGGS



SSTTT
TT

GGG
SS




S
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   174.....180.........190........ .200.........210.........220.........230.........240.........
 
   248.250.........260.........270.........280....... ..290.........300.........310.........320...
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Query Sequence  TYLPIASEVTDVNRYRSGEIDMTNNSMPIELFQKLKKEIP. . . . DEVHVDPYLCTYYYEINNQKPPFNDVRVRTALKLGM
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Template Sequence  ELTIGLDVDVLDARLIAGEFDINLEGRGLQHAAQRRATADEVLRSHTDNPRTSFLHFVAMQPHIPPFDNVHVRRAVQYAA
Template Known Secondary structure 


TTSSSSS





TT


TTSTTTTS
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   250.........260.........270.........280.........290.........300.........310.........320.........
 
   324.....330...... ...340.........350.........360.........370.........380.........390.........400.
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Query Sequence  DRDIIVNKVKAQG. . NMPAYGYTPPYTDGAKLTQPEWFGWSQEKRNEEAKKLLAEAGYTADKPLTINLLYNTSDLHKKLA
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Template Sequence  DKILLQDARGGPVNGGDLTTALFPPTLPAHQDLDLYPTGPDLRGDLDAARAELAAAGLPDG. . . . FRAVIGTQRGKFRLV
Template Known Secondary structure 
TTTTTSS

SSSS
TTSTT




SS


TTSS

TT
TT
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TT
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   330.........340.........350.........360.........370.........380.........390 .........400.....
 
   402.......410.........420....... ..430.........440.........450......... 460.......
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Query Sequence  IAASSLWKKNIGVNVKLVNQEWKTFL. . . . . . . DTRHQGTFDVARAGWCADYNEPTSFLNTMLSN. . . . . . . SSMNTAHY
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Template Sequence  ADAVVESLARVGIELTVKELDVATYFSLGAGHPETVREHGLGLLVTDWGADFPTEYGFLAPLVDGRQIKRNGGNWNLPEL
Template Known Secondary structure  TTT

STT




TT
TT

SSSS
GGG

TTS



TT

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   406...410.........420.........430.........440.........450.........460.........470.........480.....
 
   468.470.........480.........490.........500.........510.........520.........530.........540..
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Query Sequence  KSPAFDSIMAETLKVTDEAQRTALYTKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYTGKDPLDNTYTRNMYIVK
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Template Sequence  DDPEVNALIDETLHTTDPAARAELWRAVERRVMEHAVLLPLVHDKTLHFRNPWVTNVYVHPAFGLYDIQAMGLAE
Template Known Secondary structure 

T


T




TTSB
B
TTTSSB
GGG


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   486...490.........500.........510.........520.........530.........540.........550.........560
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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