Job Description P09030 Confidence 99.96% Date Thu Jan 5 11:01:48 GMT 2012 Rank 12 Aligned Residues 252 % Identity 16% Template c3ngoA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:ccr4-not transcription complex subunit 6-like; PDBTitle: crystal structure of the human cnot6l nuclease domain in complex with2 poly(a) dna Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.																			10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Query Sequence		M	K	F	V	S	F	N	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	R	A	R	P	H	Q	L	E	A	I	V	E	K	H	Q	P	D	V	I	G	L	Q	E	T	K	V	H	D	.	D	M	F	P	L	E	E	V	A	K	L	G	Y	N	V	F	Y	H	G	Q	K	G
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Template Conservation
Template Sequence		F	T	V	M	C	Y	N	V	L	C	D	K	Y	A	T	R	Q	L	Y	G	Y	C	P	S	W	A	L	N	W	E	Y	R	K	K	G	I	M	E	E	I	V	N	C	D	A	D	I	I	S	L	Q	E	V	E	T	E	Q	Y	F	T	L	F	L	P	A	L	K	E	R	G	Y	D	G	F	F	S	P	K	S	R
Template Known Secondary structure												G	G	G			T	T	T	T	T	T	S						S																		S															T							T	T	T								S		T
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		62												.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.																							.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	.	.	.	.	.	.	.	.	.	.	.	Y	G	V	A	L	L	T	K	E	T	P	I	A	V	R	R	G	F	P	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	E	A	Q	R	R	I	I	M	A	E	I	P	S	L	L	G	N	V	T	V	I	N	G
Query Conservation			.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	K	I	M	S	E	Q	E	R	K	H	V	D	G	C	A	I	F	F	K	T	E	K	F	T	L	V	Q	K	H	T	V	E	F	N	Q	V	A	M	A	N	S	D	G	S	E	A	M	L	N	R	V	M	T	K	D	N	I	G	V	A	V	V	L	E	V	H	K	E	L	F	K	Q	L	L	I	V	A	N	A
Template Known Secondary structure		T	S																			T	T	T																		T		S	S								T	T	T														G	G	G
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		Y	F	P	Q	G	E	S	R	D	H	P	I	K	F	P	A	K	A	Q	F	Y	Q	N	L	Q	N	Y	L	E	T	E	L	K	.	R	D	N	P	V	L	I	M	G	D	M	N	I	S	P	T	D	L	D	I	G	I	G	E	E	N	R	K	R	W	L	R	T	G	K	C	S	F	L	P	E	E	R	E	W	M
Query Conservation																																			.
Alig confidence							.	.	.	.	.																								.																																													.	.
Template Conservation							.	.	.	.	.																																																																					.	.
Template Sequence		H	M	H	W	D	.	.	.	.	.	P	E	Y	S	D	V	K	L	I	Q	T	M	M	F	V	S	E	V	K	N	I	L	E	K	A	S	I	P	L	V	L	C	A	D	L	N	S	L	P	D	S	G	V	V	E	Y	L	S	N	G	G	V	A	D	N	H	K	D	F	K	E	L	Y	N	E	C	L	M	.	.
Template Known Secondary structure							.	.	.	.	.	G	G	G																																				T	T	S								S	S				T	T		G	G	G	T	T							T	.	.
Template Predicted Secondary structure							.	.	.	.	.																																																																					.	.
Template SS confidence
		360	.	.	.	.						.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.											250	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.
Query Sequence		D	R	L	M	S	W	G	L	V	D	T	F	R	H	A	N	P	Q	T	A	D	R	F	S	W	F	D	Y	R	S	K	G	F	D	D	N	R	G	L	R	I	D	L	L	L	A	S	Q	P	L	A	E	C	C	V	E	T	G	I	D	Y	E	.	.	.	.	.	.	.	.	.	.	I	R	S	M	E	K	P	S
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	N	F	S	R	I	T	H	G	F	Q	L	K	S	A	Y	E	N	N	L	M	P	Y	T	N	Y	T	F	D	F	K	G	V	I	D	Y	I	F	Y	S	K	T	H	M	N	V	L	G	V	L	G	P	L	D	P	Q	W	L	V	E	N	N	I	T	G	C	P	H	P	H	I	P	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	T							S						T	T	T	T	T	S	S	S		S				S	S												T	T	T																		T	T			S	S		B	T	T	B		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
		258	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	H	A	P	V	W	A	T	F	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	H	F	S	L	L	T	Q	L	E
Template Known Secondary structure		S	B
Template Predicted Secondary structure
Template SS confidence
		528	.	530	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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