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Job DescriptionP09030
Confidence99.96%DateThu Jan 5 11:01:48 GMT 2012
Rank11Aligned Residues230
% Identity16%Templatec3g6sA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:putative endonuclease/exonuclease/phosphatase PDBTitle: crystal structure of the2 endonuclease/exonuclease/phosphatase (bvu_0621) from3 bacteroides vulgatus. northeast structural genomics4 consortium target bvr56d
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MKFVSFNINGL. . . . . . . . . RARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGH. . YGVALLT
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Template Sequence  VRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGXQEVLHNQFQDLRAGLPEYDGIGVGRDDGKTAGEYAPLFY
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GGGGGGSGGGTTT
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B

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   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   70.........80.. .......90.........100.........110.........120.........130....
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Query Sequence  KETPIAVRRGFPG. . . . . . . . . . . . . . . DDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQN
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Template Sequence  RKDKYEVLDSNTFWLAENPDSVGXXGWDAVCVRIATWAKFKDKATGKIFXAVNTHFDHVGE. . . . . . . EARRQSALLIIR
Template Known Secondary structure  TTTSSS
TTSTT


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   84.....90.........100.........110.........120.........130.........140.... .....150......
 
   135....140.........150.........160.........170.........180.........190.........200.........210....
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Query Sequence  YLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFD
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Template Sequence  KIKEI. VGERPAVVTGDFNVTDASDAYE. . . . . . . . . . . . . . . . . . . . . . . . . . TITTNEFVXKDAYKTAARVTGVDYTF
Template Known Secondary structure  .TTTS

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   157..160. ........170.........180... ......190.........200.........
 
   215....220.........230.........240.........250.........260.......
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Query Sequence  YRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFR
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Template Sequence  HDFARIPAEDCEKIDFIFVTPQV. . LVKSCEIPAEV. PEALLSDHNPQLADLE
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TTTTS
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   210.........220.........230.. .......240... ......250.........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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