Job Description P09030 Confidence 100.00% Date Thu Jan 5 11:01:48 GMT 2012 Rank 6 Aligned Residues 251 % Identity 23% Template c2jc5A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:exodeoxyribonuclease; PDBTitle: apurinic apyrimidinic (ap) endonuclease (nape) from2 neisseria meningitidis Resolution 1.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																			.																																														.	.
Query SS confidence																			.																																														.	.
Query Sequence		M	K	F	V	S	F	N	I	N	G	L	R	A	R	P	H	Q	.	L	E	A	I	V	E	K	H	Q	P	D	V	I	G	L	Q	E	T	K	V	H	D	D	M	F	P	L	E	E	V	A	K	L	G	Y	N	V	F	Y	H	G	Q	K	G	H	.	.	Y	G	V	A	L	L	T	K	E	T	P	I	A	V	R
Query Conservation																			.																																														.	.
Alig confidence																			.																																														.	.
Template Conservation
Template Sequence		L	K	I	I	S	A	N	V	N	G	I	R	S	A	Y	K	K	G	F	Y	E	Y	I	A	A	S	G	A	D	I	V	C	V	Q	E	L	K	A	Q	E	A	D	L	S	A	D	M	K	N	P	H	G	M	H	G	H	W	H	C	A	E	K	R	G	Y	S	G	V	A	V	Y	S	K	R	K	P	D	N	V	Q
Template Known Secondary structure										S	S							T	T								T	T		S											G	G	G							S	G	G	G									S	S	T	T									S	S			S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	F	P	G	D	D	E	E	A	Q	R	R	I	I	M	A	E	I	P	S	L	L	G	N	V	T	V	I	N	G	Y	F	P	Q	G	E	S	R	D	H	P	I	K	F	P	A	K	A	Q	F	Y	Q	N	L	Q	N	Y	L	E	T	E	L	K	R	D	N	P	V	L	I	M	G	D	M	N	I	S	P	T
Query Conservation
Alig confidence																					.	.	.	.																		.	.
Template Conservation																					.	.	.	.																		.	.
Template Sequence		I	G	M	G	I	E	E	F	D	R	E	G	R	F	V	R	C	D	F	.	.	.	.	G	R	L	S	V	I	S	L	Y	L	P	S	G	S	S	A	E	.	.	E	R	Q	Q	V	K	Y	R	F	L	D	A	F	Y	P	M	L	E	A	M	K	N	E	G	R	D	I	V	V	C	G	D	W	N	I	A	H	Q
Template Known Secondary structure			S		S						T	T									.	.	.	.	T	T												T	T			.	.																							T		S													S
Template Predicted Secondary structure																					.	.	.	.																		.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100					.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	D	I	G	I	G	E	E	N	R	K	R	W	L	R	T	G	K	C	S	F	L	P	E	E	R	E	W	M	D	R	L	M	S	W	G	L	V	D	T	F	R	H	A	N	P	Q	T	A	D	R	F	S	W	F	D	Y	R	S	K	G	F	D	D	N	R	G	L	R	I	D	L	L	L	A	S	Q	P	L
Query Conservation
Alig confidence							.	.	.	.	.																																											.
Template Conservation							.	.	.	.	.																																											.
Template Sequence		N	I	D	L	K	.	.	.	.	.	N	W	K	G	N	Q	K	N	S	G	F	L	P	E	E	R	E	W	I	G	K	V	I	H	K	L	G	W	T	D	M	W	R	T	L	Y	P	D	V	P	G	Y	.	T	W	W	S	N	R	G	Q	A	Y	A	K	D	V	G	W	R	I	D	Y	Q	M	V	T	P	E	L
Template Known Secondary structure		G	G	G	B	S	.	.	.	.	.		S	T	T		T	T	S	T	T	S														T	T											T	T					.				S		S	S					T	T
Template Predicted Secondary structure							.	.	.	.	.																																											.
Template SS confidence
		156	.	.	.	160						.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	C	C	V	E	T	G	I	D	Y	E	I	R	S	M	E	K	P	S	D	H	A	P	V	W	A	T	F	R
Query Conservation
Alig confidence													.	.	.	.
Template Conservation													.	.	.	.
Template Sequence		A	A	K	A	V	S	A	H	V	Y	K	.	.	.	.	D	E	K	F	S	D	H	A	P	L	V	V	E	Y	D
Template Known Secondary structure			T	T									.	.	.	.	S	S			S	S	B								S
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240					.	.	.	.	.	.	.	.	.	250	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions