Job Description P09030 Confidence 100.00% Date Thu Jan 5 11:01:48 GMT 2012 Rank 4 Aligned Residues 261 % Identity 23% Template c2j63B_ PDB info PDB header:lyase Chain: B: PDB Molecule:ap-endonuclease; PDBTitle: crystal structure of ap endonuclease lmap from leishmania2 major Resolution 2.48 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.					.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.
Predicted Secondary structure															.	.	.	.																									.	.																											.	.	.
Query SS confidence															.	.	.	.																									.	.																											.	.	.
Query Sequence		M	K	F	V	S	F	N	I	N	G	L	R	A	.	.	.	.	R	P	H	Q	L	E	A	I	V	E	K	H	Q	P	D	V	I	G	L	Q	E	T	K	V	.	.	H	D	D	M	F	P	L	E	E	V	A	K	L	G	Y	N	V	F	Y	H	G	Q	K	G	H	Y	.	.	.	G	V	A	L	L	T	K	E
Query Conservation															.	.	.	.																									.	.																											.	.	.
Alig confidence															.	.	.	.																									.	.																											.	.	.
Template Conservation
Template Sequence		Y	K	F	I	T	W	N	V	A	G	L	R	G	L	L	K	K	N	A	S	A	L	R	A	F	M	E	A	E	K	P	D	V	L	C	L	Q	E	T	K	L	N	V	D	E	A	D	A	N	A	T	L	G	V	V	D	G	Y	S	F	V	D	H	P	C	A	F	K	R	G	Y	S	G	T	R	T	Y	M	K	N
Template Known Secondary structure										S										T	T												S										B	T	T							T	S	S			T	T								B	S	S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		72	.	.	.	.															.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.							120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.
Query Sequence		T	P	I	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	G	F	P	G	D	D	E	E	A	Q	R	R	I	I	M	A	E	I	P	S	L	L	G	N	V	T	V	I	N	G	Y	F	P	Q	G	E	S	R	D	H	P	.	.	.	.	.	.	I	K	F	P	A	K	A	Q	F	Y	Q	N
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.
Template Conservation
Template Sequence		S	T	T	V	K	G	L	H	A	R	C	T	R	G	F	A	L	P	S	E	L	V	E	G	A	G	D	E	E	G	R	V	L	T	T	F	L	S	P	D	P	D	S	S	R	I	A	L	V	N	T	Y	V	A	N	S	G	M	G	L	T	R	L	P	Y	R	V	Q	S	F	D	P	S	M	R	E	Y	L	H	R
Template Known Secondary structure							T	T							S	S													T	T										S	S																		T	T	S	T	T							T
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		L	Q	N	Y	L	E	T	E	L	K	.	R	D	N	P	V	L	I	M	G	D	M	N	I	S	P	T	D	L	D	I	G	I	G	E	E	N	R	K	R	W	L	R	T	G	K	C	S	F	L	P	E	E	R	E	W	M	D	R	L	M	S	W	G	L	V	D	T	F	R	H	A	N	P	Q	T	A	D	R	F
Query Conservation												.
Alig confidence												.																																			.	.
Template Conservation																																															.	.
Template Sequence		L	D	T	W	A	T	E	N	A	A	S	S	P	H	G	F	I	W	A	G	D	L	N	V	A	E	R	D	Y	D	R	Y	Y	A	G	T	F	K	S	M	Q	E	C	S	G	.	.	F	A	P	E	E	R	M	S	F	R	E	T	M	Q	R	T	N	S	V	D	I	F	R	Q	L	Y	P	Q	A	G	P	V	Y
Template Known Secondary structure							T	T	T	T				S														S	T	T	S	B				S						T	T	S	T	T	.	.	S															T	T									S	T	T	B		S
Template Predicted Secondary structure																																															.	.
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	W	F	D	Y	R	S	K	G	F	D	D	N	R	G	L	R	I	D	L	L	L	A	S	Q	P	L	A	E	C	C	V	E	T	G	I	D	Y	E	I	R	S	M	E	K	P	S	D	H	A	P	V	W	A	T	F	R
Query Conservation
Alig confidence																																												.	.	.	.
Template Conservation																																												.	.	.	.
Template Sequence		S	F	W	S	Q	R	I	N	G	R	P	R	N	L	G	W	R	L	D	Y	F	V	V	S	S	R	L	A	S	Y	V	V	D	C	F	P	M	P	T	V	M	G	.	.	.	.	S	D	H	C	P	F	Q	M	W	M	R
Template Known Secondary structure		S	B			T	T	T	T	T	T	T	T	T			B													T	T								T	T			S	.	.	.	.	S	S	B
Template Predicted Secondary structure																																												.	.	.	.
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.					.	.	.	.	.	440	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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