Job Description P09030 Confidence 99.90% Date Thu Jan 5 11:01:48 GMT 2012 Rank 24 Aligned Residues 211 % Identity 14% Template c2ei9A_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:non-ltr retrotransposon r1bmks orf2 protein; PDBTitle: crystal structure of r1bm endonuclease domain Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	F	V	S	F	N	I	N	G	L	R	A	R	P	H	Q	L	E	A	I	V	E	K	H	Q	P	D	V	I	G	L	Q	E	T	K	V	H	D	D	M	F	P	L	E	E	V	A	K	L	G	Y	N	V	F	Y	H	G	Q	K	G	H	Y	G	V	A	L	L	T	K	E	T	P	I	A	V	R	R	G	F
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	R	I	G	Q	I	N	L	G	G	A	E	D	A	T	R	E	L	P	S	I	A	R	D	L	G	L	D	I	V	L	V	Q	E	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	M	V	G	F	L	A	Q	C	G	A	H	P	K	A	G	V	Y	I	R	N	R	V	L	P	C	A	V	L	H
Template Known Secondary structure										T	T							T									T		S						S		.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S	S	S					S	S	S		S						S	S	T	T	S						G
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.															.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	D	D	E	E	A	Q	R	R	I	I	M	A	E	I	P	S	L	L	G	N	V	T	V	I	N	G	Y	F	P	Q	G	E	S	R	D	H	P	I	K	F	P	A	K	A	Q	F	Y	Q	N	L	Q	N	Y	L	E	T	E	L	K	R	D	N	P	V	L	I	M	G	D	M	N	I	S	P	T	D	L	D
Query Conservation
Alig confidence								.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Sequence		H	L	S	S	T	H	.	.	.	.	.	.	I	T	V	V	H	I	G	G	W	D	L	Y	M	V	S	A	Y	F	Q	Y	S	D	P	I	D	P	Y	L	H	R	L	G	N	I	L	D	.	.	.	.	.	.	.	.	.	.	.	R	L	R	G	A	R	V	V	I	C	A	D	T	N	A	.	.	.	.	.	.
Template Known Secondary structure		G	G			S	S	.	.	.	.	.	.							T	T	T	T										T	T	S		S													.	.	.	.	.	.	.	.	.	.	.		T	T	T	S											.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.							.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.												.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	I	G	E	E	N	R	K	R	W	L	R	T	G	K	C	S	F	L	P	E	E	R	E	W	M	D	R	L	M	S	W	G	L	V	D	T	F	R	H	A	N	P	Q	T	A	D	R	F	S	W	F	D	Y	R	S	K	G	F	D	D	N	R	G	L	R	I	D	L	L	L	A	S	Q	P	L	A	E	C
Query Conservation
Alig confidence																																								.	.	.	.	.																.	.	.	.	.	.	.													.	.
Template Conservation																																								.	.	.	.	.																.	.	.	.	.	.	.													.	.
Template Sequence		H	S	P	L	W	H	S	L	P	R	H	Y	V	G	R	G	Q	E	V	A	D	R	R	A	K	M	E	D	F	I	G	A	R	R	L	V	V	H	.	.	.	.	.	N	A	D	G	H	L	P	T	F	S	T	A	N	G	E	.	.	.	.	.	.	.	S	Y	V	D	V	T	L	S	T	R	G	V	.	.	R
Template Known Secondary structure				G	G	G	T							S	S	S																		T	T					.	.	.	.	.			T	T				S				T	T			.	.	.	.	.	.	.										T	T		.	.
Template Predicted Secondary structure																																								.	.	.	.	.																.	.	.	.	.	.	.													.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.						.	.	.	.	.	.	.	.	180	.	.	.	.	.	.								.	.	.	190	.	.	.	.	.	.	.	.			.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	V	E	T	G	I	D	Y	E	I	R	S	M	E	K	P	S	D	H	A	P	V	W	A	T	F	R
Query Conservation
Alig confidence											.	.	.	.	.
Template Conservation											.	.	.	.	.
Template Sequence		V	S	E	W	R	V	T	N	E	.	.	.	.	.	S	S	S	D	H	R	L	I	V	F	G	V	G
Template Known Secondary structure									S		.	.	.	.	.		S	S	S	B
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		200	.	.	.	.	.	.	.	.						.	210	.	.	.	.	.	.	.	.	.	220	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions